Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.9e-238 827.4 418 100.0
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 9.7e-194 680.2 467 78.8
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 9.7e-186 653.7 474 76.8
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 5.0e-182 641.3 474 75.7
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 2.7e-180 635.6 474 75.1
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 5.0e-158 561.6 473 68.3
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 1.1e-141 507.3 479 62.4
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 1.4e-139 500.4 468 62.6
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.3e-137 493.8 416 64.7
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.2e-137 493.0 477 60.8
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 8.4e-137 491.1 472 60.4
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 4.1e-136 488.8 474 59.7
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 9.2e-136 487.6 413 65.4
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 9.2e-136 487.6 396 67.4
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 1.6e-135 486.9 408 65.9
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 2.1e-135 486.5 421 63.9
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.7e-135 486.1 463 59.6
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 4.6e-135 485.3 403 66.3
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 7.8e-135 484.6 374 70.3
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 7.8e-135 484.6 425 64.2
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 2.3e-134 483.0 425 64.0
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 3.9e-134 482.3 473 59.2
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 8.6e-134 481.1 399 66.2
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.2e-132 477.2 464 59.7
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 2.8e-132 476.1 430 63.5
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 2.8e-132 476.1 406 65.5
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 4.7e-132 475.3 394 66.0
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.1e-131 474.2 443 60.9
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 4.0e-131 472.2 429 64.1
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 5.2e-131 471.9 454 59.5
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 6.9e-131 471.5 435 62.3
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 6.9e-131 471.5 423 63.6
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 8.9e-131 471.1 409 65.5
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 1.2e-130 470.7 381 67.2
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 1.5e-130 470.3 403 64.5
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.5e-130 470.3 424 62.5
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.5e-130 470.3 368 68.5
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 2.0e-130 469.9 368 68.2
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 2.0e-130 469.9 400 65.2
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 3.4e-130 469.2 360 68.9
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 4.4e-130 468.8 361 68.7
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 4.4e-130 468.8 361 68.7
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 4.4e-130 468.8 368 67.9
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 5.8e-130 468.4 385 66.2
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 7.6e-130 468.0 385 66.0
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 9.9e-130 467.6 364 69.0
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 1.3e-129 467.2 357 69.2
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.3e-129 467.2 395 64.8
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 1.7e-129 466.8 426 62.4
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 3.8e-129 465.7 385 66.0
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.8e-129 465.7 385 66.0
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 4.9e-129 465.3 361 68.4
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 6.4e-129 464.9 446 60.1
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 6.4e-129 464.9 348 71.3
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 8.4e-129 464.5 397 64.5
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.1e-128 464.2 399 64.7
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.4e-128 463.8 385 65.7
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.9e-128 463.4 411 63.0
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.9e-128 463.4 411 63.0
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 3.2e-128 462.6 391 64.5
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 4.2e-128 462.2 396 64.1
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 2.1e-127 459.9 456 58.8
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 2.7e-127 459.5 340 72.1
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 3.5e-127 459.1 314 79.6
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 7.8e-127 458.0 383 64.8
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 1.0e-126 457.6 381 65.6
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 1.3e-126 457.2 423 60.8
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 1.3e-126 457.2 386 64.5
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.3e-126 457.2 416 61.8
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 3.0e-126 456.1 343 71.1
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 6.6e-126 454.9 385 64.9
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 8.7e-126 454.5 364 66.5
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.1e-125 454.1 343 70.6
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 1.1e-125 454.1 406 63.5
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 2.5e-125 453.0 383 65.0
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 4.3e-125 452.2 384 66.7
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 4.3e-125 452.2 364 66.2
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 5.6e-125 451.8 358 68.2
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 1.3e-124 450.7 385 64.2
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 2.8e-124 449.5 381 65.1
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 4.8e-124 448.7 349 68.2
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.1e-123 447.6 385 64.2
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 1.1e-123 447.6 365 66.3
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.4e-123 447.2 415 60.5
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 1.4e-123 447.2 357 67.5
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 3.1e-123 446.0 421 60.3
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 4.0e-123 445.7 357 66.9
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 1.5e-122 443.7 382 64.7
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 8.4e-121 438.0 492 53.7
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.9e-120 436.8 346 67.9
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 7.1e-120 434.9 343 67.6
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 9.3e-120 434.5 390 62.3
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 9.3e-120 434.5 343 67.9
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 1.6e-119 433.7 341 67.7
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.7e-119 433.0 305 73.1
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.5e-117 427.2 350 64.3
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 3.3e-117 426.0 370 65.9
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 2.1e-116 423.3 394 60.7
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.2e-114 417.5 415 57.8
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 3.8e-113 412.5 373 62.5
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.6e-111 405.6 361 61.5
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 1.9e-109 400.2 360 62.5
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 4.8e-108 395.6 333 66.4
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 8.2e-108 394.8 375 57.9
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 2.4e-107 393.3 403 53.6
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 1.0e-105 387.9 314 66.6
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 1.3e-105 387.5 343 60.6
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 1.7e-105 387.1 298 69.5
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 2.5e-104 383.3 342 62.9
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.5e-104 383.3 353 60.6
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.3e-102 377.5 437 50.8
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 2.8e-100 369.8 268 74.3
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 3.7e-100 369.4 267 74.2
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 6.9e-99 365.2 253 75.9
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 1.9e-96 357.1 325 61.2
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 5.1e-94 349.0 289 67.5
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 1.1e-93 347.8 201 88.1
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 2.5e-88 330.1 213 78.4
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 9.7e-85 318.2 202 78.7
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 1.0e-78 298.1 280 61.4
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 1.1e-77 294.7 247 67.2
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 6.5e-65 252.3 299 52.5
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 9.5e-56 221.9 132 83.3
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 3.5e-50 203.4 330 37.9
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 2.3e-49 200.7 335 38.2
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 1.6e-39 167.9 184 53.8
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 1.6e-39 167.9 330 32.4
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 4.4e-37 159.8 106 76.4
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 5.6e-32 142.9 85 83.5
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 9.5e-32 142.1 189 47.1
CAN.G308.6 Capsicum annuum HOM05D004748 ORTHO05D005825 2.8e-31 140.6 133 64.7
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 1.8e-30 137.9 80 80.0
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 8.9e-30 135.6 226 41.2
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 2.6e-29 134.0 101 66.3
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 7.5e-29 132.5 80 81.2
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.9e-27 127.9 84 72.6
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 1.2e-26 125.2 109 62.4
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.7e-25 121.3 83 72.3
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 2.5e-24 117.5 79 73.4
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 2.5e-24 117.5 79 73.4
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 2.5e-24 117.5 79 73.4
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 3.3e-24 117.1 63 88.9
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 2.1e-23 114.4 89 65.2
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 2.1e-23 114.4 89 65.2
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.2e-23 112.8 143 48.3
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 8.1e-23 112.5 89 64.0
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 1.6e-18 98.2 62 79.0
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 1.5e-13 81.6 52 80.8
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 4.9e-12 76.6 86 51.2
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 1.6e-10 71.6 53 71.7
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.7e-09 68.2 36 91.7
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 2.5e-08 64.3 75 49.3
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 4.3e-08 63.5 36 80.6
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 7.3e-08 62.8 37 75.7
arahy.Tifrunner.gnm1.ann1.SQ6FML Arachis hypogaea HOM05D000121 ORTHO05D031608 1.3e-07 62.0 37 73.0


User provided reference genes

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