Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.0e-75 286.6 139 100.0
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.0e-46 190.3 139 72.7
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 5.6e-29 131.3 62 96.8
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.1e-28 129.4 61 98.4
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.8e-28 129.0 61 95.1
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.8e-28 129.0 61 95.1
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 3.6e-28 128.6 61 95.1
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 3.6e-28 128.6 61 95.1
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 3.6e-28 128.6 61 95.1
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 8.1e-28 127.5 61 95.1
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 1.1e-27 127.1 61 93.4
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.1e-27 127.1 61 93.4
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.4e-27 126.7 61 93.4
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 2.3e-27 125.9 61 91.8
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 3.1e-27 125.6 61 91.8
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 3.1e-27 125.6 61 91.8
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 3.1e-27 125.6 61 91.8
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 8.9e-27 124.0 61 90.2
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 8.9e-27 124.0 61 90.2
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.2e-26 123.6 61 90.2
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.5e-26 123.2 61 90.2
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.5e-26 123.2 61 90.2
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 1.5e-26 123.2 61 90.2
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 1.5e-26 123.2 61 90.2
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 1.5e-26 123.2 74 74.3
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 2.0e-26 122.9 61 88.5
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 2.0e-26 122.9 61 88.5
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 2.6e-26 122.5 61 88.5
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 3.4e-26 122.1 61 86.9
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 3.4e-26 122.1 61 88.5
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 4.4e-26 121.7 61 88.5
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 4.4e-26 121.7 61 88.5
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 4.4e-26 121.7 61 88.5
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 7.6e-26 120.9 61 86.9
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 7.6e-26 120.9 61 85.2
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 7.6e-26 120.9 61 85.2
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 7.6e-26 120.9 61 85.2
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 7.6e-26 120.9 61 88.5
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 7.6e-26 120.9 61 88.5
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 9.9e-26 120.6 61 88.5
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 9.9e-26 120.6 61 86.9
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 9.9e-26 120.6 61 86.9
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 9.9e-26 120.6 61 85.2
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 9.9e-26 120.6 61 85.2
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 9.9e-26 120.6 61 85.2
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 9.9e-26 120.6 61 86.9
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 9.9e-26 120.6 61 85.2
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 1.7e-25 119.8 61 83.6
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.7e-25 119.8 61 83.6
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 1.7e-25 119.8 61 83.6
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 2.2e-25 119.4 61 83.6
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 2.2e-25 119.4 61 83.6
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 2.2e-25 119.4 61 85.2
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 2.2e-25 119.4 61 85.2
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 2.9e-25 119.0 61 83.6
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 2.9e-25 119.0 61 83.6
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 2.9e-25 119.0 61 83.6
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.9e-25 119.0 61 83.6
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 3.7e-25 118.6 61 83.6
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 3.7e-25 118.6 61 83.6
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 3.7e-25 118.6 61 83.6
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 3.7e-25 118.6 61 85.2
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 6.4e-25 117.9 61 85.2
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 8.4e-25 117.5 61 82.0
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 8.4e-25 117.5 61 82.0
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 8.4e-25 117.5 61 83.6
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 8.4e-25 117.5 61 85.2
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 8.4e-25 117.5 61 85.2
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 8.4e-25 117.5 67 74.6
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 8.4e-25 117.5 61 82.0
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 8.4e-25 117.5 121 52.9
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 1.1e-24 117.1 61 83.6
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 1.1e-24 117.1 61 80.3
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 1.1e-24 117.1 61 85.2
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 1.1e-24 117.1 61 83.6
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 1.4e-24 116.7 61 82.0
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 1.4e-24 116.7 61 82.0
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.9e-24 116.3 78 65.4
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 2.4e-24 115.9 62 79.0
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 2.4e-24 115.9 62 79.0
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 2.4e-24 115.9 60 83.3
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 2.4e-24 115.9 61 80.3
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 2.4e-24 115.9 61 82.0
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 3.2e-24 115.5 61 80.3
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 3.2e-24 115.5 61 80.3
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 3.2e-24 115.5 61 80.3
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 3.2e-24 115.5 59 84.7
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 3.2e-24 115.5 59 84.7
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 3.2e-24 115.5 61 82.0
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 5.4e-24 114.8 61 80.3
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 5.4e-24 114.8 61 80.3
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 5.4e-24 114.8 61 82.0
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 5.4e-24 114.8 61 78.7
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 5.4e-24 114.8 61 80.3
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 5.4e-24 114.8 62 82.3
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 7.1e-24 114.4 61 82.0
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 7.1e-24 114.4 61 78.7
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 7.1e-24 114.4 61 83.6
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 9.2e-24 114.0 61 82.0
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 9.2e-24 114.0 84 63.1
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 9.2e-24 114.0 61 78.7
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 9.2e-24 114.0 59 83.1
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 1.2e-23 113.6 62 80.6
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 1.2e-23 113.6 59 81.4
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 1.2e-23 113.6 61 82.0
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 1.2e-23 113.6 59 84.7
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 1.6e-23 113.2 61 80.3
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 1.6e-23 113.2 61 78.7
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 1.6e-23 113.2 61 78.7
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 1.6e-23 113.2 61 78.7
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 1.6e-23 113.2 61 80.3
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 1.6e-23 113.2 61 80.3
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 2.1e-23 112.8 61 80.3
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 2.1e-23 112.8 61 77.0
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 2.1e-23 112.8 61 78.7
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 2.7e-23 112.5 57 87.7
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 2.7e-23 112.5 61 77.0
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 3.5e-23 112.1 71 66.2
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 3.5e-23 112.1 61 77.0
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 4.6e-23 111.7 60 76.7
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 4.6e-23 111.7 61 80.3
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 4.6e-23 111.7 61 80.3
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 4.6e-23 111.7 61 80.3
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 4.6e-23 111.7 61 77.0
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 4.6e-23 111.7 61 80.3
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 4.6e-23 111.7 71 67.6
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 7.8e-23 110.9 61 75.4
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 7.8e-23 110.9 60 78.3
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 1.0e-22 110.5 60 75.0
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 1.3e-22 110.2 61 75.4
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 2.3e-22 109.4 56 82.1
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 3.0e-22 109.0 60 76.7
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 3.9e-22 108.6 61 73.8
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 3.9e-22 108.6 59 76.3
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 5.1e-22 108.2 61 78.7
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 5.1e-22 108.2 61 73.8
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 5.1e-22 108.2 60 76.7
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 5.1e-22 108.2 60 78.3
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 1.1e-21 107.1 60 78.3
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 1.1e-21 107.1 60 78.3
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 1.5e-21 106.7 61 78.7
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 1.5e-21 106.7 66 66.7
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 1.9e-21 106.3 59 74.6
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 4.3e-21 105.1 69 68.1
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 7.3e-21 104.4 61 73.8
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 7.3e-21 104.4 60 75.0
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 7.3e-21 104.4 60 75.0
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 1.2e-20 103.6 58 77.6
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 1.6e-20 103.2 62 72.6
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 1.6e-20 103.2 62 72.6
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 1.6e-20 103.2 62 72.6
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 3.6e-20 102.1 58 74.1
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 1.4e-19 100.1 60 71.7
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 4.0e-19 98.6 95 51.6
SalBow6G5392 Salvia bowleyana HOM05D004074 ORTHO05D004717 2.9e-17 92.4 47 85.1
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 4.9e-17 91.7 61 60.7
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 1.4e-16 90.1 67 61.2
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 1.9e-16 89.7 45 84.4
AagrBONN_evm.TU.Sc2ySwM_344.1495 Anthoceros agrestis HOM05D004074 ORTHO05D004717 2.4e-16 89.4 61 59.0
MBI14_g24286_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 2.4e-16 89.4 47 76.6
Lsat_1_v5_gn_5_137500 Lactuca sativa HOM05D001270 ORTHO05D001099 2.7e-15 85.9 46 82.6
SMO351G0623 Selaginella moellendorffii HOM05D004074 ORTHO05D004717 1.0e-14 84.0 57 59.6
Pp3c1_12120 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.7e-14 83.2 63 55.6
Pp3c2_24870 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.7e-14 83.2 63 55.6
C02p45000 Brassica napus HOM05D000128 ORTHO05D000059 8.7e-14 80.9 45 75.6
Thhalv10022333m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.5e-13 80.1 61 60.7
Mapoly0001s0230 Marchantia polymorpha HOM05D004074 ORTHO05D004717 1.9e-13 79.7 65 52.3
MCO11G253 Micromonas commoda HOM05D004074 ORTHO05D004717 7.3e-13 77.8 66 50.0
Pp3c1_10140 Physcomitrium patens HOM05D004074 ORTHO05D004717 8.1e-12 74.3 125 37.6
PSO455G0136 Papaver somniferum HOM05D004074 ORTHO05D004717 2.4e-11 72.8 71 56.3
Zm00001eb394860 Zea mays HOM05D004074 ORTHO05D004717 9.0e-11 70.9 51 58.8
Medtr4g005960 Medicago truncatula HOM05D004074 ORTHO05D004717 1.2e-10 70.5 73 46.6
PRCOL_00000946 Prasinoderma coloniale HOM05D004074 ORTHO05D004717 3.4e-10 68.9 58 50.0
Cre10.g420700 Chlamydomonas reinhardtii HOM05D004074 ORTHO05D004717 6.0e-07 58.2 52 46.2


User provided reference genes

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