Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.3e-185 652.9 316 100.0
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.0e-155 553.5 285 93.3
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 4.2e-141 505.0 253 94.9
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 8.8e-139 497.3 285 84.9
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.5e-138 496.5 285 84.9
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 1.7e-134 483.0 323 75.2
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.9e-134 482.3 285 82.5
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 3.2e-133 478.8 296 79.7
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.5e-125 453.4 285 75.8
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 8.0e-124 447.6 287 74.2
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.8e-123 446.4 286 74.1
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 2.0e-122 443.0 287 72.5
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.5e-122 441.0 286 74.1
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.2e-121 439.5 286 73.1
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 8.3e-121 437.6 286 72.0
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.1e-120 437.2 285 73.3
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.8e-120 436.4 285 73.0
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.1e-120 435.3 286 73.4
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.1e-120 435.3 286 73.4
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 4.1e-120 435.3 285 73.3
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 1.6e-119 433.3 286 72.7
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.0e-119 433.0 286 71.7
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 2.7e-119 432.6 288 72.6
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 2.7e-119 432.6 287 71.8
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.7e-119 432.6 287 72.5
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 2.7e-119 432.6 287 71.1
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 2.7e-119 432.6 286 72.4
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 3.5e-119 432.2 284 73.2
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 4.5e-119 431.8 283 71.4
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 1.3e-118 430.3 286 71.7
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.7e-118 429.9 285 70.2
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.7e-118 429.9 286 71.3
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 2.9e-118 429.1 323 67.8
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 2.9e-118 429.1 286 71.3
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 3.9e-118 428.7 297 70.4
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.9e-118 428.7 286 71.0
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 3.9e-118 428.7 286 71.0
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.9e-118 428.7 287 71.1
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 5.0e-118 428.3 286 72.7
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 6.6e-118 427.9 285 71.6
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 6.6e-118 427.9 284 71.8
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 8.6e-118 427.6 286 73.1
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 8.6e-118 427.6 287 71.8
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 1.1e-117 427.2 287 71.1
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 1.9e-117 426.4 285 70.9
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 4.3e-117 425.2 287 70.0
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 5.6e-117 424.9 286 71.0
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 9.5e-117 424.1 284 70.8
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.6e-116 423.3 284 71.8
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.6e-116 423.3 286 69.9
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 3.6e-116 422.2 286 70.6
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.6e-116 422.2 286 71.7
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 6.1e-116 421.4 286 69.9
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 8.0e-116 421.0 287 70.4
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 8.0e-116 421.0 285 71.2
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 1.0e-115 420.6 287 69.3
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 1.0e-115 420.6 285 73.3
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.4e-115 420.2 286 71.3
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.4e-115 420.2 289 70.9
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 1.8e-115 419.9 289 70.9
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 2.3e-115 419.5 287 72.1
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.3e-115 419.5 281 70.1
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 3.1e-115 419.1 287 69.7
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 5.2e-115 418.3 287 69.7
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 5.2e-115 418.3 287 69.3
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 5.2e-115 418.3 287 69.7
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 8.9e-115 417.5 287 70.4
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 2.0e-114 416.4 294 69.0
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 4.4e-114 415.2 285 70.2
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.7e-113 412.1 277 71.8
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.7e-113 412.1 323 64.1
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.7e-113 412.1 323 64.1
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 4.9e-113 411.8 286 67.1
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 1.4e-112 410.2 287 66.9
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.9e-112 409.8 286 69.6
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 2.4e-112 409.5 285 68.8
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 7.0e-112 407.9 286 68.2
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 7.0e-112 407.9 286 68.2
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 7.0e-112 407.9 284 66.9
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.2e-111 407.1 253 75.5
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 2.0e-111 406.4 284 70.4
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 2.7e-111 406.0 290 67.2
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 2.7e-111 406.0 287 68.6
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 3.5e-111 405.6 286 67.1
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 3.5e-111 405.6 286 67.5
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 4.6e-111 405.2 286 68.2
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 6.0e-111 404.8 285 67.0
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 7.8e-111 404.4 286 67.8
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 3.0e-110 402.5 286 66.1
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.9e-110 402.1 254 75.6
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 8.6e-110 401.0 287 67.2
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.1e-109 400.6 254 74.8
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 2.5e-109 399.4 286 67.1
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 7.3e-109 397.9 302 65.2
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 9.5e-109 397.5 296 66.9
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 6.2e-108 394.8 291 65.3
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.4e-107 393.7 261 72.8
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.4e-107 393.7 254 73.6
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 2.3e-107 392.9 283 68.2
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 8.9e-107 391.0 285 68.1
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 2.4e-104 382.9 287 67.2
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.6e-103 380.2 254 71.7
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.7e-103 379.4 286 66.1
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 3.3e-101 372.5 285 64.6
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 4.3e-101 372.1 289 65.4
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 6.2e-100 368.2 288 63.2
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.5e-98 363.6 286 62.6
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 1.5e-90 337.0 280 60.4
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 2.6e-90 336.3 242 67.4
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.6e-90 336.3 227 69.6
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 3.4e-90 335.9 293 59.7
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 5.4e-88 328.6 169 93.5
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 6.0e-87 325.1 208 75.0
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 5.6e-85 318.5 255 63.5
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.8e-84 316.2 284 56.7
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 5.3e-83 312.0 276 56.5
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 9.9e-82 307.8 283 55.5
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 2.7e-79 299.7 289 55.0
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 4.6e-79 298.9 281 52.0
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 5.3e-75 285.4 237 59.1
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 9.0e-75 284.6 228 65.8
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 1.2e-63 247.7 185 65.4
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 1.6e-55 220.7 298 45.0
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 4.6e-47 192.6 130 70.0
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 3.0e-46 189.9 262 42.0
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.8e-41 172.9 152 57.9
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 8.5e-41 171.8 272 37.1
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 1.2e-39 167.9 150 56.0
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 2.7e-39 166.8 152 55.3
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 1.8e-38 164.1 150 55.3
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 4.4e-37 159.5 169 55.0
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 2.0e-34 150.6 137 55.5
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 3.0e-30 136.7 82 76.8
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 6.7e-30 135.6 114 55.3
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 8.8e-30 135.2 263 33.5
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 1.8e-27 127.5 368 27.4
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 2.6e-26 123.6 93 64.5
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 3.8e-25 119.8 104 61.5
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.0e-22 109.8 99 55.6
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 4.4e-21 106.3 63 77.8
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 7.0e-19 99.0 213 34.3
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.8e-17 93.2 60 73.3
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 1.9e-16 90.9 112 46.4
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 2.5e-16 90.5 62 61.3
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 3.6e-15 86.7 87 51.7
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 4.7e-15 86.3 79 55.7
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.8e-14 84.3 56 69.6
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 5.2e-14 82.8 65 63.1
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 8.8e-14 82.0 83 51.8
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 8.8e-14 82.0 83 51.8
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 3.4e-13 80.1 87 49.4
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 3.7e-12 76.6 186 30.6
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 1.1e-11 75.1 129 44.2
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.1e-11 73.2 46 67.4
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.1e-11 73.2 46 65.2
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.0e-11 72.4 46 67.4
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.0e-11 72.4 46 67.4
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.6e-10 71.2 42 81.0
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 2.0e-10 70.9 139 33.1
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 2.3e-09 67.4 46 71.7
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 5.0e-09 66.2 43 74.4
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 6.6e-09 65.9 46 69.6


User provided reference genes

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