Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.1e-101 373.2 189 100.0
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.3e-92 343.2 189 91.0
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 5.4e-83 311.2 181 88.4
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 6.8e-78 294.3 184 78.8
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 5.7e-77 291.2 184 77.7
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 7.5e-77 290.8 184 77.7
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 4.7e-71 271.6 180 76.1
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 9.2e-67 257.3 184 68.5
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 2.0e-66 256.1 184 67.9
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.6e-66 255.0 184 67.4
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.3e-65 252.7 184 66.3
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 2.8e-63 245.7 184 65.8
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 4.7e-63 245.0 184 63.0
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.1e-62 243.8 178 66.9
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 7.5e-61 237.7 184 62.0
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 9.8e-61 237.3 184 61.4
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 1.7e-60 236.5 184 64.1
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 2.2e-60 236.1 184 58.7
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 2.2e-60 236.1 184 62.0
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 2.9e-60 235.7 184 59.8
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 2.9e-60 235.7 184 59.8
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 2.9e-60 235.7 184 59.8
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 2.9e-60 235.7 178 66.9
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 3.7e-60 235.3 184 62.5
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 4.9e-60 235.0 184 56.5
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 8.3e-60 234.2 184 59.8
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 8.3e-60 234.2 184 60.3
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 8.3e-60 234.2 184 59.8
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.9e-59 233.0 184 60.9
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 4.1e-59 231.9 184 61.4
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 5.4e-59 231.5 184 62.5
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 5.4e-59 231.5 184 58.7
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 7.0e-59 231.1 184 59.2
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 1.2e-58 230.3 184 59.2
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 2.1e-58 229.6 184 59.2
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 3.5e-58 228.8 184 60.9
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 6.0e-58 228.0 184 59.2
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 7.8e-58 227.6 184 58.2
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 7.8e-58 227.6 184 58.2
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 7.8e-58 227.6 184 58.2
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 7.8e-58 227.6 184 60.3
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.0e-57 227.3 184 57.6
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 1.0e-57 227.3 184 58.2
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.0e-57 227.3 184 59.8
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.3e-57 226.9 184 58.2
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 1.7e-57 226.5 184 58.2
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 1.7e-57 226.5 184 57.6
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 1.7e-57 226.5 184 60.3
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 3.9e-57 225.3 184 58.2
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 3.9e-57 225.3 180 61.1
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 3.9e-57 225.3 184 59.2
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 5.1e-57 224.9 184 57.6
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 5.1e-57 224.9 184 57.6
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 6.6e-57 224.6 184 59.8
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 8.6e-57 224.2 184 59.2
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.5e-56 223.4 184 57.1
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 1.9e-56 223.0 184 58.2
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 1.9e-56 223.0 184 56.5
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 2.5e-56 222.6 184 59.2
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 3.3e-56 222.2 184 55.4
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 4.3e-56 221.9 184 58.7
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 5.6e-56 221.5 184 57.6
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 5.6e-56 221.5 185 61.1
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 5.6e-56 221.5 184 59.2
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 5.6e-56 221.5 184 59.8
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 5.6e-56 221.5 184 57.1
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 7.3e-56 221.1 184 54.3
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 7.3e-56 221.1 184 58.7
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.3e-56 221.1 184 59.8
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 9.5e-56 220.7 184 56.0
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 9.5e-56 220.7 184 56.5
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 1.6e-55 219.9 184 57.6
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 1.6e-55 219.9 181 59.7
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 2.8e-55 219.2 184 57.6
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 2.8e-55 219.2 184 57.6
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 3.6e-55 218.8 184 58.2
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.7e-55 218.4 184 58.7
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 4.7e-55 218.4 184 57.6
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 4.7e-55 218.4 185 59.5
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 4.7e-55 218.4 185 58.4
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 4.7e-55 218.4 184 54.9
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 8.1e-55 217.6 184 56.5
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 8.1e-55 217.6 184 54.9
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 1.1e-54 217.2 184 57.1
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 2.3e-54 216.1 168 63.7
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 2.3e-54 216.1 184 58.7
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.3e-54 216.1 184 58.7
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.0e-54 215.3 184 58.2
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 6.8e-54 214.5 186 58.1
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 2.0e-53 213.0 184 57.1
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 3.4e-53 212.2 184 56.5
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.4e-53 212.2 184 56.0
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 3.4e-53 212.2 184 57.6
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 3.4e-53 212.2 184 53.3
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 4.4e-53 211.8 184 57.1
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 7.5e-53 211.1 184 57.1
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 9.9e-53 210.7 184 54.3
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 9.9e-53 210.7 184 56.5
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 2.2e-52 209.5 184 57.1
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 2.9e-52 209.1 184 55.4
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 2.9e-52 209.1 184 57.1
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 4.9e-52 208.4 172 56.4
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 8.3e-52 207.6 179 56.4
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 1.9e-51 206.5 184 54.9
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 2.4e-51 206.1 184 55.4
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 3.2e-51 205.7 184 53.3
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 4.1e-51 205.3 184 54.3
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 7.1e-51 204.5 184 54.9
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 7.1e-51 204.5 184 54.9
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 9.2e-51 204.1 177 56.5
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 9.2e-51 204.1 177 56.5
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 3.5e-50 202.2 184 55.4
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 6.0e-50 201.4 184 53.3
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 6.0e-50 201.4 185 55.7
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 7.8e-50 201.1 185 54.6
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 1.0e-49 200.7 177 55.4
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 1.3e-49 200.3 184 52.7
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.3e-49 200.3 184 52.7
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 1.7e-49 199.9 184 51.6
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 3.0e-49 199.1 184 55.4
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 3.9e-49 198.7 184 53.8
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 8.6e-49 197.6 177 55.9
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 2.5e-48 196.1 154 62.3
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.5e-48 196.1 179 50.3
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 4.3e-48 195.3 184 53.8
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.3e-48 195.3 184 51.1
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.2e-47 193.7 184 51.6
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.6e-47 192.2 181 51.4
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 2.4e-46 189.5 182 52.2
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 6.8e-46 188.0 184 52.2
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.2e-45 187.2 187 47.6
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 2.0e-45 186.4 184 50.0
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 2.6e-45 186.0 184 50.0
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 4.4e-45 185.3 179 52.5
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 7.6e-45 184.5 175 52.6
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 8.4e-44 181.0 184 48.4
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 8.4e-44 181.0 184 48.4
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 4.2e-43 178.7 180 48.3
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 7.1e-43 177.9 184 48.4
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 2.1e-42 176.4 181 51.4
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 2.7e-42 176.0 179 48.0
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 1.1e-40 170.6 109 75.2
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.2e-39 167.2 184 47.8
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.6e-39 166.8 184 45.7
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 2.8e-39 166.0 180 43.9
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.8e-39 166.0 184 44.0
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.8e-39 166.0 184 47.8
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.1e-38 164.1 184 45.1
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 5.3e-38 161.8 95 82.1
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.5e-37 160.2 176 46.0
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 4.4e-37 158.7 189 40.7
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.9e-36 156.0 124 58.9
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 3.8e-36 155.6 184 49.5
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 1.9e-35 153.3 126 57.1
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 8.7e-33 144.4 121 55.4
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 1.5e-32 143.7 185 43.8
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 5.6e-32 141.7 102 64.7
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 6.4e-28 128.3 179 39.1
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 5.4e-27 125.2 106 57.5
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 7.1e-27 124.8 172 40.1
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 3.7e-23 112.5 92 58.7
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 1.1e-22 110.9 99 57.6
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 1.4e-19 100.5 89 51.7
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 5.5e-19 98.6 185 31.9
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.6e-15 87.0 70 64.3
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 2.1e-15 86.7 81 54.3
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 2.4e-14 83.2 80 53.8
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 5.3e-14 82.0 85 48.2
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 7.6e-13 78.2 70 61.4
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 1.3e-12 77.4 169 31.4
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 5.5e-11 72.0 174 29.9
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 1.6e-10 70.5 73 54.8
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 2.7e-10 69.7 52 59.6
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 1.0e-09 67.8 40 80.0
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 5.1e-09 65.5 67 52.2
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 8.7e-09 64.7 52 61.5


User provided reference genes

Program Settings