Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 5.6e-224 780.8 442 100.0
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 9.0e-190 667.2 459 86.5
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 4.6e-170 601.7 416 75.7
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.0e-169 600.5 443 72.7
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.4e-169 600.1 443 72.5
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.8e-161 573.2 392 75.5
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 2.3e-153 546.2 335 81.2
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 3.7e-151 538.9 416 67.5
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 1.8e-150 536.6 426 67.4
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 2.0e-149 533.1 416 67.1
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.0e-148 530.8 463 63.1
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 1.9e-147 526.6 421 65.1
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 4.2e-147 525.4 409 67.5
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 3.6e-146 522.3 409 65.8
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 8.0e-146 521.2 405 68.4
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.4e-145 520.4 413 65.6
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 1.4e-145 520.4 393 66.9
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 3.0e-145 519.2 394 69.3
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.0e-145 518.8 417 64.3
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 3.4e-144 515.8 426 64.6
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 9.7e-144 514.2 392 66.8
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 9.7e-144 514.2 392 66.1
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 1.7e-143 513.5 423 64.8
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.7e-143 513.5 432 63.4
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 1.7e-143 513.5 425 62.1
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.4e-142 510.4 447 60.6
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 4.1e-142 508.8 429 62.5
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 5.3e-142 508.4 339 73.7
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 7.0e-142 508.1 419 63.0
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 1.2e-141 507.3 424 63.7
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 1.6e-141 506.9 404 63.1
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 2.7e-141 506.1 407 63.6
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 5.9e-141 505.0 391 65.5
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 7.7e-141 504.6 429 61.5
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 7.7e-141 504.6 400 64.2
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.0e-140 504.2 416 63.0
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 1.3e-140 503.8 416 63.0
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.2e-140 503.1 419 62.5
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 3.8e-140 502.3 402 63.2
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 6.5e-140 501.5 430 61.4
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 6.5e-140 501.5 425 61.6
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 1.1e-139 500.7 429 60.4
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 1.5e-139 500.4 430 60.9
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 2.5e-139 499.6 435 60.9
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 3.2e-139 499.2 388 65.5
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 4.2e-139 498.8 417 61.9
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 5.5e-139 498.4 409 63.6
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 5.5e-139 498.4 430 60.5
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 7.2e-139 498.0 406 63.1
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 9.4e-139 497.7 403 63.5
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.6e-138 496.9 421 61.8
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.6e-138 496.9 436 62.2
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 4.7e-138 495.4 391 64.7
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 6.1e-138 495.0 440 60.5
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 8.0e-138 494.6 418 62.0
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 8.0e-138 494.6 421 60.6
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 8.0e-138 494.6 420 61.0
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 1.4e-137 493.8 418 62.0
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.4e-136 489.2 428 61.0
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 4.4e-136 488.8 411 60.8
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 5.7e-136 488.4 434 59.0
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 7.5e-136 488.0 416 60.8
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 1.3e-135 487.3 422 60.9
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.7e-135 486.9 422 60.9
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 2.2e-135 486.5 450 57.8
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.8e-135 486.1 408 62.0
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 3.7e-135 485.7 393 64.1
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 3.7e-135 485.7 421 60.6
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 3.7e-135 485.7 408 60.8
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 4.8e-135 485.3 424 60.4
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 4.8e-135 485.3 443 56.9
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.4e-134 483.8 434 58.5
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 1.2e-133 480.7 425 60.2
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 2.0e-133 479.9 539 51.4
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.7e-133 479.6 406 59.1
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 4.5e-133 478.8 419 59.4
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 7.7e-133 478.0 417 60.0
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.0e-132 477.6 419 59.2
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 1.7e-132 476.9 382 65.2
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.7e-132 476.9 382 65.2
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 5.0e-132 475.3 453 57.4
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.1e-131 474.2 419 58.9
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 2.5e-131 473.0 409 62.6
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 4.2e-131 472.2 384 63.8
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.5e-131 471.9 408 61.0
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 7.2e-131 471.5 413 61.0
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 7.2e-131 471.5 413 61.0
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 9.5e-131 471.1 394 63.2
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 1.2e-130 470.7 384 63.5
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.2e-130 470.7 384 63.5
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.2e-130 470.7 384 63.5
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.2e-130 470.7 408 61.3
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 2.8e-130 469.5 430 59.8
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 2.8e-130 469.5 413 61.0
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 2.8e-130 469.5 430 59.8
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 2.8e-130 469.5 413 61.0
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.6e-130 469.2 408 61.0
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 8.0e-130 468.0 417 59.5
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.0e-129 467.6 384 63.5
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.0e-129 467.6 400 61.0
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 1.4e-129 467.2 420 59.5
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.4e-129 467.2 420 59.5
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 2.3e-129 466.5 384 63.3
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 3.0e-129 466.1 389 60.7
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 4.0e-129 465.7 384 63.5
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.3e-127 460.7 410 60.5
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 3.7e-127 459.1 384 62.8
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.9e-127 458.8 421 58.4
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.1e-126 457.6 375 64.3
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 1.1e-126 457.6 390 65.4
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 7.0e-126 454.9 386 60.9
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.5e-125 452.6 437 60.2
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.7e-124 450.3 421 58.7
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.7e-124 450.3 381 63.3
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 5.0e-124 448.7 400 58.8
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 5.0e-124 448.7 433 56.8
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 5.6e-123 445.3 310 71.0
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 9.5e-123 444.5 494 51.0
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 6.1e-122 441.8 386 60.6
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 3.1e-121 439.5 333 69.7
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.0e-120 436.8 337 65.9
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 7.0e-118 428.3 391 56.5
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 7.8e-117 424.9 344 64.0
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 7.8e-117 424.9 357 63.3
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.7e-116 423.7 373 60.1
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 2.5e-115 419.9 356 61.2
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 5.6e-115 418.7 336 63.1
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 7.3e-115 418.3 322 66.5
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 4.0e-113 412.5 506 48.2
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.4e-112 409.5 335 63.3
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 1.9e-110 403.7 398 55.8
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 4.1e-110 402.5 335 60.9
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 5.4e-110 402.1 416 53.4
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 9.2e-110 401.4 432 52.8
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 2.3e-105 386.7 405 49.1
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.5e-104 384.0 421 49.6
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 6.4e-103 378.6 354 57.3
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 8.3e-103 378.3 390 51.3
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 7.1e-102 375.2 397 52.4
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 2.1e-101 373.6 422 48.6
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.7e-101 373.2 428 51.2
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 6.6e-100 368.6 388 52.1
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 3.6e-98 362.8 425 48.2
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.4e-97 360.9 315 57.8
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 1.8e-97 360.5 315 60.6
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 4.0e-97 359.4 278 64.7
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 8.1e-90 335.1 438 47.7
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 6.6e-84 315.5 311 53.1
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 7.6e-80 302.0 182 78.6
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 4.3e-67 259.6 237 62.0
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.3e-63 248.1 155 76.8
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.1e-57 228.4 408 38.0
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.9e-54 217.6 234 52.6
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 1.6e-53 214.5 210 57.6
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 5.0e-47 193.0 169 59.8
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.8e-31 140.2 379 32.7
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 5.0e-31 139.8 149 55.7
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 8.5e-31 139.0 116 59.5
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 5.5e-30 136.3 142 48.6
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 1.6e-29 134.8 346 28.0
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 8.8e-28 129.0 164 43.9
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.5e-24 116.7 285 30.9
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.2e-19 102.1 49 91.8
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 7.5e-19 99.4 59 78.0
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 8.9e-12 75.9 197 27.9
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.7e-10 70.5 39 76.9
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 1.4e-09 68.6 140 36.4
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 1.4e-09 68.6 38 78.9
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.2e-08 65.5 63 46.0
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.6e-08 63.5 231 26.4
Peaxi162Scf00126g01016 Petunia axillaris HOM05D004042 ORTHO05D306396 5.0e-07 60.1 30 83.3
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 1.9e-06 58.2 40 70.0
arahy.Tifrunner.gnm1.ann1.9C4868 Arachis hypogaea HOM05D000311 ORTHO05D000183 9.5e-06 55.8 34 67.6


User provided reference genes

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