Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.9e-152 542.7 335 100.0
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.5e-131 471.5 329 90.9
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.0e-113 414.1 334 82.9
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 3.3e-112 409.1 332 80.7
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 8.2e-111 404.4 332 80.1
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 7.5e-96 354.8 330 75.5
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 5.0e-92 342.0 335 71.6
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 8.6e-92 341.3 293 78.2
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 8.6e-92 341.3 277 82.7
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.6e-92 341.3 292 77.7
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.1e-91 340.9 318 73.9
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 1.5e-91 340.5 324 73.1
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 7.3e-91 338.2 332 72.9
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 1.6e-90 337.0 293 77.5
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 2.1e-90 336.7 338 69.2
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.7e-90 335.5 341 69.5
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 5.2e-89 332.0 328 71.6
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.0e-88 330.1 339 68.1
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.3e-87 327.4 335 69.3
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.3e-87 327.4 335 69.3
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 1.8e-86 323.6 330 70.0
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.8e-86 323.6 327 71.3
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 7.0e-86 321.6 330 70.6
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 3.5e-85 319.3 335 67.5
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.5e-85 319.3 329 70.5
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 5.9e-85 318.5 313 72.2
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 5.9e-85 318.5 323 69.3
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 5.9e-85 318.5 325 68.6
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.0e-84 317.8 329 70.5
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.3e-84 317.4 327 70.6
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 3.0e-84 316.2 279 77.1
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 5.0e-84 315.5 310 71.6
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 6.6e-84 315.1 283 77.4
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.9e-83 313.5 305 71.5
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.9e-83 313.5 325 66.5
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.5e-83 313.2 293 74.4
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 4.3e-83 312.4 307 70.0
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 4.3e-83 312.4 330 66.4
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 4.3e-83 312.4 298 72.1
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 7.3e-83 311.6 304 63.2
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 7.3e-83 311.6 324 68.5
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.6e-82 310.5 295 74.2
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.1e-82 310.1 295 73.2
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 2.8e-82 309.7 315 71.4
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 1.1e-81 307.8 324 68.8
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 2.3e-81 306.6 282 75.9
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 3.1e-81 306.2 330 67.3
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 8.9e-81 304.7 322 69.6
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 2.0e-80 303.5 293 71.7
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.3e-79 300.8 331 64.4
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.3e-79 300.8 341 65.7
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.9e-79 299.7 326 67.2
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 3.7e-79 299.3 312 69.9
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.9e-79 298.9 327 66.4
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 4.9e-79 298.9 341 64.5
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 6.4e-79 298.5 287 72.5
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.9e-78 297.0 327 66.1
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.4e-78 296.6 333 65.5
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 2.4e-78 296.6 296 71.6
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 4.1e-78 295.8 337 49.9
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 4.1e-78 295.8 331 65.9
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 6.0e-77 292.0 331 65.9
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 2.3e-76 290.0 282 72.3
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 3.0e-76 289.7 330 64.8
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 5.0e-76 288.9 283 66.4
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 6.6e-76 288.5 332 63.9
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.1e-75 287.7 283 70.7
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 2.5e-75 286.6 330 64.2
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 3.3e-75 286.2 287 70.0
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 3.3e-75 286.2 300 69.3
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 4.3e-75 285.8 331 63.1
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 4.3e-75 285.8 333 62.2
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 7.3e-75 285.0 334 63.5
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.6e-74 283.9 283 66.8
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.6e-74 283.9 283 70.3
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 6.2e-74 282.0 321 62.9
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.8e-73 280.4 331 62.8
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.3e-73 280.0 330 62.7
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 6.8e-73 278.5 334 63.2
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.2e-71 273.5 284 60.9
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 2.9e-71 273.1 307 64.2
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 4.1e-70 269.2 316 64.2
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.6e-69 267.3 285 68.8
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 2.1e-69 266.9 269 73.2
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 1.7e-68 263.8 183 72.1
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 6.6e-68 261.9 286 65.7
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.6e-66 257.3 282 66.3
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 3.6e-66 256.1 291 57.0
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 8.1e-66 255.0 326 61.0
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.1e-66 255.0 169 71.6
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 4.4e-64 249.2 186 67.2
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 4.4e-64 249.2 283 60.1
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 9.9e-64 248.1 292 63.4
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 2.9e-63 246.5 311 62.7
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 6.4e-63 245.4 314 46.2
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 8.4e-63 245.0 328 58.8
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.4e-62 244.2 309 62.8
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.4e-62 244.2 166 68.7
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.2e-62 243.0 210 61.9
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.2e-61 241.1 289 62.6
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 2.1e-61 240.4 170 71.8
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 1.3e-60 237.7 159 69.2
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.3e-60 236.9 238 73.1
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 3.9e-60 236.1 293 63.1
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.7e-60 235.0 330 57.3
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 1.1e-59 234.6 329 57.4
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 2.4e-57 226.9 322 57.8
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.5e-56 224.2 163 66.3
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 4.4e-56 222.6 402 49.5
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.2e-55 220.3 356 37.6
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.8e-55 219.5 332 55.1
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 8.4e-55 218.4 244 73.0
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.8e-50 203.4 330 53.9
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 4.8e-50 202.6 284 59.9
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 6.4e-47 192.2 192 81.2
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.6e-45 187.6 286 56.6
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 1.1e-43 181.4 192 77.6
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 1.3e-39 167.9 166 88.0
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.1e-38 164.9 213 42.3
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.2e-37 161.4 123 63.4
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 2.7e-37 160.2 188 47.3
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 6.2e-34 149.1 287 50.2
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 3.1e-33 146.7 277 50.5
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 1.2e-32 144.8 121 57.0
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.1e-29 134.0 199 39.2
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.0e-28 131.7 171 42.7
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.9e-27 127.5 174 41.4
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.2e-23 114.0 142 83.8
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 2.1e-21 107.5 79 60.8
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 3.6e-21 106.7 110 46.4
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.7e-18 96.7 128 83.6
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 1.5e-16 91.3 146 37.7
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.6e-16 90.5 81 53.1
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 4.5e-16 89.7 134 61.9
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 3.2e-14 83.6 114 43.9
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.6e-13 81.3 125 80.8
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.5e-08 63.2 35 74.3
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.0e-07 62.0 54 53.7
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 1.7e-07 61.2 39 66.7
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 6.5e-07 59.3 48 66.7
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 3.2e-06 57.0 59 45.8


User provided reference genes

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