Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 0.0e+00 1435.2 772 100.0
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 0.0e+00 1226.1 772 86.8
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 4.9e-308 1060.8 798 74.7
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 1.1e-307 1059.7 806 73.7
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 6.9e-286 987.3 799 71.1
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 3.0e-281 971.8 855 64.9
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 2.9e-276 955.3 798 69.3
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 3.2e-182 642.9 669 53.8
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 4.1e-182 642.5 666 56.3
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 1.3e-175 620.9 763 52.9
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 2.9e-175 619.8 794 51.6
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 6.4e-175 618.6 603 60.7
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 6.6e-172 608.6 708 50.0
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 2.1e-157 560.5 780 44.9
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.9e-155 553.9 854 44.4
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.4e-153 547.7 648 49.1
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.2e-152 544.7 704 47.0
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 1.9e-150 537.3 729 46.8
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 9.0e-145 518.5 962 40.9
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 6.5e-143 512.3 718 46.4
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 1.3e-140 504.6 718 46.2
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 4.3e-139 499.6 720 47.1
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.6e-136 490.3 663 44.3
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 1.2e-133 481.5 736 45.5
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.7e-133 480.3 643 44.8
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.3e-130 471.5 680 41.9
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 3.7e-130 469.9 769 43.8
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 4.8e-130 469.5 664 46.5
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.8e-129 467.6 766 43.6
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.8e-129 467.6 769 43.7
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.5e-128 464.5 746 43.4
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 1.5e-128 464.5 649 45.5
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.0e-127 461.8 771 43.6
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.9e-126 457.6 680 40.9
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.6e-125 453.4 765 42.1
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.6e-125 453.4 749 43.0
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.1e-123 448.4 711 44.3
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 4.4e-123 446.4 830 40.6
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 6.3e-122 442.6 803 39.7
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 1.1e-121 441.8 835 40.0
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 7.0e-121 439.1 823 40.1
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 3.5e-120 436.8 832 39.4
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 4.5e-120 436.4 782 40.0
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 7.7e-120 435.6 734 43.1
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 6.5e-119 432.6 770 39.4
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 2.5e-118 430.6 738 42.7
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 7.2e-118 429.1 760 40.5
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 9.4e-118 428.7 821 39.5
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.4e-116 424.9 660 43.3
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 2.3e-116 424.1 777 41.1
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 6.7e-116 422.5 742 39.8
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 7.5e-115 419.1 677 41.1
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.7e-114 417.9 745 41.2
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 7.7e-112 409.1 808 38.2
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 5.0e-111 406.4 788 38.5
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 8.5e-111 405.6 806 36.7
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 1.1e-110 405.2 716 41.1
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.5e-110 404.8 827 36.9
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 5.5e-110 402.9 842 36.1
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 2.1e-109 401.0 716 39.0
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 2.0e-107 394.4 706 40.8
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 2.6e-107 394.0 719 39.1
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 1.7e-106 391.3 780 36.8
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 2.2e-106 391.0 645 39.4
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.4e-105 387.5 799 36.4
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 2.4e-105 387.5 723 38.3
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 5.4e-105 386.3 793 37.6
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 7.0e-105 386.0 705 38.7
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 9.1e-105 385.6 703 40.5
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 2.0e-104 384.4 645 39.5
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.6e-101 373.6 666 38.6
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 4.7e-101 373.2 771 36.6
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 8.0e-101 372.5 649 39.1
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.8e-100 371.3 563 40.9
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.3e-100 370.9 689 38.6
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 2.3e-100 370.9 716 39.7
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 5.2e-100 369.8 668 38.8
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.5e-99 368.2 752 37.0
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.7e-98 364.8 672 37.9
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 4.9e-98 363.2 667 38.1
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 6.3e-98 362.8 953 31.3
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 8.3e-98 362.5 860 35.1
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.8e-97 361.3 774 37.2
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.8e-97 361.3 906 32.2
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 5.9e-96 356.3 743 34.5
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 7.7e-96 355.9 773 34.3
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.1e-94 352.1 820 33.0
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.1e-94 352.1 722 34.9
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 4.3e-94 350.1 659 38.5
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 2.1e-93 347.8 657 38.5
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 3.6e-93 347.1 873 34.4
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 4.7e-93 346.7 652 36.2
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 1.4e-92 345.1 641 37.0
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 6.8e-92 342.8 715 33.6
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.5e-91 341.7 680 35.7
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 4.4e-91 340.1 678 35.8
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 4.4e-91 340.1 662 38.8
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 7.5e-91 339.3 678 35.8
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 4.1e-89 333.6 678 35.5
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.3e-87 328.6 696 35.5
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.5e-86 325.1 636 37.1
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 2.5e-86 324.3 740 35.7
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 5.6e-86 323.2 684 35.1
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 6.2e-85 319.7 582 42.6
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 8.0e-85 319.3 652 39.1
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 7.5e-83 312.8 757 35.9
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.4e-81 308.5 895 29.7
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 6.0e-80 303.1 901 29.7
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 3.0e-79 300.8 338 53.3
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.2e-73 280.8 686 31.9
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 9.5e-70 269.2 673 30.9
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 3.6e-69 267.3 673 32.5
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 7.8e-64 249.6 687 28.5
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 4.3e-62 243.8 716 31.1
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 5.2e-60 236.9 561 32.1
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.9e-57 228.4 191 60.7
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.6e-56 225.3 309 46.0
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.1e-54 219.2 423 41.6
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.9e-47 194.1 271 45.0
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 8.7e-47 193.0 286 42.0
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 3.1e-44 184.5 467 33.6
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.5e-43 182.2 693 26.3
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 4.9e-42 177.2 171 50.9
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 4.6e-40 170.6 172 53.5
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.5e-38 165.6 231 40.7
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 9.6e-38 162.9 203 43.8
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 2.5e-33 148.3 147 55.1
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 5.7e-30 137.1 233 40.8
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 1.1e-25 122.9 269 31.2
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.6e-24 119.0 220 33.6
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 2.7e-24 118.2 147 47.6
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 1.8e-23 115.5 186 37.6
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 5.9e-19 100.5 62 75.8
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 1.0e-18 99.8 784 23.3
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 4.2e-17 94.4 324 26.5
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 5.7e-14 84.0 449 24.3
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 9.7e-14 83.2 226 31.9
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.3e-10 72.8 73 54.8
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 2.3e-07 62.0 89 36.0
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 9.7e-06 56.6 61 52.5


User provided reference genes

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