Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 2.7e-109 398.7 203 100.0
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 6.1e-93 344.4 227 82.8
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 2.2e-82 309.3 204 79.9
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 1.2e-80 303.5 206 80.1
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 2.0e-80 302.8 203 79.3
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 3.5e-80 302.0 206 79.1
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 3.0e-79 298.9 202 79.2
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 2.8e-61 239.2 212 60.4
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 3.1e-60 235.7 210 61.0
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 8.9e-60 234.2 215 58.6
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 8.9e-60 234.2 211 60.7
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 2.0e-59 233.0 203 61.6
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 2.6e-59 232.6 201 60.7
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 5.8e-59 231.5 206 61.2
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 5.8e-59 231.5 208 60.1
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 7.6e-59 231.1 218 58.7
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 7.6e-59 231.1 207 59.9
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 7.6e-59 231.1 212 59.4
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 2.2e-58 229.6 213 60.6
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 2.9e-58 229.2 215 60.0
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 6.4e-58 228.0 205 61.0
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 6.4e-58 228.0 212 59.0
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 1.4e-57 226.9 208 59.1
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 1.9e-57 226.5 219 55.3
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 3.2e-57 225.7 212 60.8
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 3.2e-57 225.7 210 57.6
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 1.6e-56 223.4 211 58.3
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.6e-56 223.4 218 56.4
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 6.0e-56 221.5 218 55.5
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 6.0e-56 221.5 210 57.6
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 7.8e-56 221.1 210 57.6
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.3e-55 220.3 208 56.7
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.7e-55 219.9 218 56.0
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 3.9e-55 218.8 211 58.3
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 5.1e-55 218.4 179 65.4
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 6.6e-55 218.0 230 53.9
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 1.1e-54 217.2 201 58.2
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 1.5e-54 216.9 209 56.9
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.9e-54 216.5 209 56.9
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 1.9e-54 216.5 212 55.2
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 2.1e-53 213.0 221 55.2
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 4.8e-53 211.8 214 55.6
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 6.2e-53 211.5 222 53.2
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 6.2e-53 211.5 210 55.2
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 2.4e-52 209.5 204 55.9
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 3.1e-52 209.1 239 53.6
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 4.0e-52 208.8 207 57.5
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 4.0e-52 208.8 230 51.3
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 9.0e-52 207.6 144 70.1
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 1.2e-51 207.2 112 92.9
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 2.6e-51 206.1 202 55.0
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 3.4e-51 205.7 245 50.2
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 5.8e-51 204.9 221 51.1
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 5.8e-51 204.9 207 54.1
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 9.9e-51 204.1 209 53.1
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 9.9e-51 204.1 229 49.8
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.7e-50 203.4 212 54.2
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.7e-50 203.4 215 53.5
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 3.8e-50 202.2 215 54.0
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 4.9e-50 201.8 191 56.0
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 3.2e-49 199.1 220 54.1
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 9.3e-49 197.6 210 53.8
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 9.3e-49 197.6 217 49.8
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 1.6e-48 196.8 221 50.2
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.1e-48 196.4 218 53.2
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 4.6e-48 195.3 214 51.4
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 6.0e-48 194.9 204 53.4
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 1.7e-47 193.4 201 52.2
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 1.7e-47 193.4 205 52.7
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 6.6e-47 191.4 250 50.4
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.5e-46 190.3 280 44.3
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 4.3e-46 188.7 220 50.9
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 6.2e-45 184.9 203 49.8
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 6.2e-45 184.9 197 51.3
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 8.1e-45 184.5 207 50.2
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.8e-44 183.3 188 55.3
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 4.0e-44 182.2 201 48.8
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 4.0e-44 182.2 219 48.4
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 5.3e-44 181.8 217 48.8
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 9.0e-44 181.0 201 49.8
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 9.0e-44 181.0 201 48.8
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 9.0e-44 181.0 201 49.8
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 2.0e-43 179.9 213 48.4
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 2.0e-43 179.9 129 68.2
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 3.4e-43 179.1 201 46.8
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 7.6e-43 177.9 212 50.5
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 1.3e-42 177.2 208 48.1
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 6.4e-42 174.9 202 50.0
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 8.4e-42 174.5 204 49.5
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 5.1e-39 165.2 236 43.6
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 7.4e-38 161.4 204 44.6
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 1.6e-37 160.2 212 43.9
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 1.7e-34 150.2 224 44.2
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 1.4e-33 147.1 204 43.6
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 4.6e-32 142.1 143 55.9
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 1.5e-30 137.1 124 58.9
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 9.3e-25 117.9 130 52.3
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 6.1e-24 115.2 136 50.7
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 2.3e-23 113.2 82 67.1
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 3.0e-23 112.8 127 55.1
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 8.7e-23 111.3 81 63.0
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 3.4e-19 99.4 203 35.5
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 4.5e-19 99.0 72 63.9
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 1.8e-15 87.0 210 31.4
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 2.3e-15 86.7 103 46.6
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 1.1e-14 84.3 55 70.9
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 6.3e-13 78.6 78 44.9
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 4.1e-12 75.9 78 44.9
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 6.9e-12 75.1 47 68.1
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 1.2e-08 64.3 132 31.8
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 2.1e-08 63.5 106 34.9
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 4.7e-08 62.4 129 31.0
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 7.9e-08 61.6 135 31.1
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.0e-07 61.2 99 42.4
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 1.0e-07 61.2 106 33.0
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 1.8e-07 60.5 166 29.5
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 8.8e-07 58.2 106 34.0
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 8.8e-07 58.2 106 34.0
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 1.1e-06 57.8 106 34.9
TWI56G1135 Tripterygium wilfordii HOM05D005920 ORTHO05D007211 1.1e-06 57.8 141 27.7
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 1.5e-06 57.4 106 34.0
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 1.5e-06 57.4 141 31.9
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 2.0e-06 57.0 122 32.8
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 2.6e-06 56.6 102 33.3
CSS0020287 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 7.4e-06 55.1 131 30.5
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 7.4e-06 55.1 122 32.8
Nitab4.5_0002252g0080 Nicotiana tabacum HOM05D000868 ORTHO05D000711 7.4e-06 55.1 117 33.3
Peaxi162Scf00027g00214 Petunia axillaris HOM05D000868 ORTHO05D000711 7.4e-06 55.1 134 32.1
Cc10_g07370 Coffea canephora HOM05D000868 ORTHO05D000711 9.7e-06 54.7 159 27.7
RcHm_v2.0_Chr3g0448591 Rosa chinensis HOM05D000868 ORTHO05D000711 9.7e-06 54.7 88 33.0


User provided reference genes

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