Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002613g0090 Nicotiana tabacum HOM05D001012 ORTHO05D006553 3.1e-66 255.0 127 100.0
Nitab4.5_0005154g0070 Nicotiana tabacum HOM05D001012 ORTHO05D006553 1.3e-29 133.3 78 91.0
Nitab4.5_0001041g0100 Nicotiana tabacum HOM05D001012 ORTHO05D006553 2.8e-27 125.6 82 84.1
Peaxi162Scf00531g00325 Petunia axillaris HOM05D001012 ORTHO05D006553 7.1e-23 110.9 74 78.4
CAN.G812.18 Capsicum annuum HOM05D001012 ORTHO05D006553 2.8e-19 99.0 72 72.2
Solyc09g090850.3 Solanum lycopersicum HOM05D001012 ORTHO05D006553 4.8e-19 98.2 56 85.7
Sopen09g033810 Solanum pennellii HOM05D001012 ORTHO05D006553 4.8e-19 98.2 56 85.7
PGSC0003DMG400001554 Solanum tuberosum HOM05D001012 ORTHO05D006553 4.8e-19 98.2 56 85.7
Oeu047121.1 Olea europaea HOM05D001012 ORTHO05D006553 3.6e-14 82.0 85 58.8
CSS0001601 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 7.9e-14 80.9 68 63.2
CSS0016929 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 7.9e-14 80.9 68 63.2
ClCG05G003930 Citrullus lanatus HOM05D001012 ORTHO05D006553 3.9e-13 78.6 50 72.0
Rhsim02G0163200 Rhododendron simsii HOM05D000001 ORTHO05D013373 8.8e-13 77.4 70 62.9
MSTRG.24651 Avicennia marina HOM05D001012 ORTHO05D006553 1.1e-12 77.0 90 50.0
MELO3C006368.2 Cucumis melo HOM05D001012 ORTHO05D006553 1.5e-12 76.6 50 68.0
Oeu020134.1 Olea europaea HOM05D001012 ORTHO05D006553 1.5e-12 76.6 73 57.5
Lalb_Chr07g0186031 Lupinus albus HOM05D001012 ORTHO05D006553 1.9e-12 76.3 59 62.7
Lalb_Chr12g0204701 Lupinus albus HOM05D001012 ORTHO05D006553 1.9e-12 76.3 74 55.4
CsaV3_3G011600 Cucumis sativus L. HOM05D001012 ORTHO05D006553 2.5e-12 75.9 50 66.0
GSVIVG01027936001 Vitis vinifera HOM05D001012 ORTHO05D006553 2.5e-12 75.9 64 57.8
arahy.Tifrunner.gnm1.ann1.G1SBH4 Arachis hypogaea HOM05D001012 ORTHO05D006553 3.3e-12 75.5 89 50.6
arahy.Tifrunner.gnm1.ann1.LF7IV9 Arachis hypogaea HOM05D001012 ORTHO05D006553 3.3e-12 75.5 89 50.6
Lalb_Chr13g0295511 Lupinus albus HOM05D001012 ORTHO05D006553 3.3e-12 75.5 59 62.7
Migut.G00561 Erythranthe guttata HOM05D001012 ORTHO05D006553 4.3e-12 75.1 49 69.4
TWI53G2025 Tripterygium wilfordii HOM05D001012 ORTHO05D006553 5.7e-12 74.7 85 47.1
Cfa014796 Carpinus fangiana HOM05D001012 ORTHO05D006553 7.4e-12 74.3 85 52.9
Glyma.08G122800 Glycine max HOM05D001012 ORTHO05D006553 7.4e-12 74.3 59 61.0
Sed0004779 Sechium edule HOM05D001012 ORTHO05D006553 7.4e-12 74.3 59 55.9
VMungo0251G0808 Vigna mungo HOM05D001012 ORTHO05D006553 9.7e-12 73.9 78 55.1
Phvul.002G245600 Phaseolus vulgaris HOM05D001012 ORTHO05D006553 1.7e-11 73.2 59 59.3
FvH4_4g05010 Fragaria vesca HOM05D001012 ORTHO05D006553 2.2e-11 72.8 61 60.7
Lj4g0004868 Lotus japonicus HOM05D001012 ORTHO05D006553 2.2e-11 72.8 59 61.0
Haze_11480 Corylus avellana HOM05D001012 ORTHO05D006553 2.8e-11 72.4 55 61.8
Glyma.05G165400 Glycine max HOM05D001012 ORTHO05D006553 2.8e-11 72.4 59 59.3
FAN12G4090 Fragaria x ananassa HOM05D001012 ORTHO05D006553 3.7e-11 72.0 66 56.1
FAN17G2151 Fragaria x ananassa HOM05D001012 ORTHO05D006553 3.7e-11 72.0 61 60.7
Lj6A637T67 Lonicera japonica HOM05D001012 ORTHO05D006553 3.7e-11 72.0 48 70.8
FAN22G2107 Fragaria x ananassa HOM05D001012 ORTHO05D006553 4.8e-11 71.6 79 51.9
CANSAT78G1811 Cannabis sativa HOM05D001012 ORTHO05D006553 8.2e-11 70.9 71 57.7
Cpa.g.sc59.15 Carica papaya HOM05D001012 ORTHO05D006553 8.2e-11 70.9 88 53.4
Ciclev10006525m.g Citrus clementina HOM05D001012 ORTHO05D006553 8.2e-11 70.9 72 48.6
Dinv29795 Davidia involucrata HOM05D001012 ORTHO05D006553 8.2e-11 70.9 95 51.6
RcHm_v2.0_Chr4g0395821 Rosa chinensis HOM05D001012 ORTHO05D006553 8.2e-11 70.9 80 50.0
Ca_17859_v3 Cicer arietinum L. HOM05D001012 ORTHO05D006553 1.1e-10 70.5 60 61.7
COL.COLO4_15982 Corchorus olitorius HOM05D001012 ORTHO05D006553 1.4e-10 70.1 57 59.6
Thecc.04G266600 Theobroma cacao HOM05D001012 ORTHO05D006553 1.8e-10 69.7 68 50.0
Gohir.A09G231000 Gossypium hirsutum HOM05D001012 ORTHO05D006553 2.4e-10 69.3 70 52.9
Rhsim04G0171000 Rhododendron simsii HOM05D001012 ORTHO05D006553 2.4e-10 69.3 71 59.2
MD13G1223300 Malus domestica HOM05D001012 ORTHO05D006553 3.1e-10 68.9 56 60.7
Duzib052G0032 Durio zibethinus HOM05D001012 ORTHO05D006553 5.3e-10 68.2 58 55.2
Duzib212G1028 Durio zibethinus HOM05D001012 ORTHO05D006553 5.3e-10 68.2 69 49.3
BcaC08g44307 Brassica carinata HOM05D001012 ORTHO05D006553 6.9e-10 67.8 105 42.9
A05p16540 Brassica napus HOM05D001012 ORTHO05D006553 6.9e-10 67.8 66 60.6
C06p17310 Brassica napus HOM05D001012 ORTHO05D006553 6.9e-10 67.8 105 42.9
BolC6t36927H Brassica oleracea HOM05D001012 ORTHO05D006553 6.9e-10 67.8 105 42.9
BraA05t20558Z Brassica rapa HOM05D001012 ORTHO05D006553 6.9e-10 67.8 66 60.6
TAR633G0662 Trochodendron aralioides HOM05D001012 ORTHO05D006553 6.9e-10 67.8 62 48.4
Dinv27122 Davidia involucrata HOM05D001012 ORTHO05D006553 9.1e-10 67.4 50 62.0
Eucgr.H02904 Eucalyptus grandis HOM05D001012 ORTHO05D006553 9.1e-10 67.4 72 50.0
Gohir.D09G232100 Gossypium hirsutum HOM05D001012 ORTHO05D006553 9.1e-10 67.4 70 52.9
Gorai.006G254900 Gossypium raimondii HOM05D001012 ORTHO05D006553 9.1e-10 67.4 70 52.9
MD16G1227600 Malus domestica HOM05D001012 ORTHO05D006553 9.1e-10 67.4 65 53.8
Duzib151G0254 Durio zibethinus HOM05D001012 ORTHO05D006553 1.2e-09 67.0 61 55.7
ECA247G2191 Erigeron canadensis HOM05D001012 ORTHO05D006553 1.2e-09 67.0 79 44.3
Prupe.1G050300 Prunus persica HOM05D001012 ORTHO05D006553 1.2e-09 67.0 60 51.7
Gohir.D02G049100 Gossypium hirsutum HOM05D001012 ORTHO05D006553 1.5e-09 66.6 62 51.6
Gorai.005G054300 Gossypium raimondii HOM05D001012 ORTHO05D006553 1.5e-09 66.6 62 51.6
CSS0048740 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 2.0e-09 66.2 57 61.4
PSO764G0162 Papaver somniferum HOM05D001012 ORTHO05D006553 2.0e-09 66.2 70 51.4
PSO832G0948 Papaver somniferum HOM05D001012 ORTHO05D006553 2.0e-09 66.2 70 51.4
AL9U10100 Arabidopsis lyrata HOM05D001012 ORTHO05D006553 2.6e-09 65.9 59 59.3
Gohir.A02G043500 Gossypium hirsutum HOM05D001012 ORTHO05D006553 2.6e-09 65.9 62 50.0
Lsat_1_v5_gn_9_39921 Lactuca sativa HOM05D001012 ORTHO05D006553 3.4e-09 65.5 70 52.9
Medtr8g088230 Medicago truncatula HOM05D001012 ORTHO05D006553 3.4e-09 65.5 64 54.7
Aa31LG9G4190 Aethionema arabicum HOM05D001012 ORTHO05D006553 4.5e-09 65.1 58 58.6
Carub.0007s2910 Capsella rubella HOM05D001012 ORTHO05D006553 4.5e-09 65.1 85 45.9
CARHR219090 Cardamine hirsuta HOM05D001012 ORTHO05D006553 5.9e-09 64.7 51 64.7
Cc03_g06470 Coffea canephora HOM05D001012 ORTHO05D006553 5.9e-09 64.7 62 58.1
Thhalv10027024m.g Eutrema salsugineum HOM05D001012 ORTHO05D006553 7.7e-09 64.3 51 62.7
Sp7g11010 Schrenkiella parvula HOM05D001012 ORTHO05D006553 7.7e-09 64.3 51 62.7
A04p08680 Brassica napus HOM05D001012 ORTHO05D006553 1.0e-08 63.9 100 43.0
BraA04t16560Z Brassica rapa HOM05D001012 ORTHO05D006553 1.3e-08 63.5 100 42.0
BcaB03g16098 Brassica carinata HOM05D001012 ORTHO05D006553 1.7e-08 63.2 101 41.6
Psat7g065120 Pisum sativum HOM05D001012 ORTHO05D006553 1.7e-08 63.2 64 57.8
AT4G13450 Arabidopsis thaliana HOM05D001012 ORTHO05D006553 2.2e-08 62.8 60 58.3
BcaC02g09422 Brassica carinata HOM05D001012 ORTHO05D006553 2.2e-08 62.8 102 41.2
C04p42440 Brassica napus HOM05D001012 ORTHO05D006553 2.2e-08 62.8 102 41.2
BolC4t25823H Brassica oleracea HOM05D001012 ORTHO05D006553 2.2e-08 62.8 102 41.2
A08p06800 Brassica napus HOM05D001012 ORTHO05D006553 2.9e-08 62.4 51 58.8
BraA08t32698Z Brassica rapa HOM05D001012 ORTHO05D006553 2.9e-08 62.4 51 58.8
Manes.03G157600 Manihot esculenta HOM05D001012 ORTHO05D006553 8.5e-08 60.8 49 59.2
MD11G1081000 Malus domestica HOM05D001012 ORTHO05D006553 1.1e-07 60.5 70 50.0
TPR.G6786 Trifolium pratense HOM05D001012 ORTHO05D006553 1.1e-07 60.5 60 60.0
Atru.chr4.1898 Acer truncatum HOM05D001012 ORTHO05D006553 1.4e-07 60.1 67 49.3
BcaB04g17687 Brassica carinata HOM05D001012 ORTHO05D006553 1.4e-07 60.1 102 41.2
Prupe.6G061400 Prunus persica HOM05D001012 ORTHO05D006553 1.4e-07 60.1 70 48.6
RcHm_v2.0_Chr5g0068561 Rosa chinensis HOM05D001012 ORTHO05D006553 4.2e-07 58.5 86 44.2
FvH4_3g38130 Fragaria vesca HOM05D001012 ORTHO05D006553 5.5e-07 58.2 77 44.2
FAN11G1796 Fragaria x ananassa HOM05D001012 ORTHO05D006553 5.5e-07 58.2 77 44.2
SalBow3G0364 Salvia bowleyana HOM05D001012 ORTHO05D006553 5.5e-07 58.2 66 48.5
SalBow3G3922 Salvia bowleyana HOM05D001012 ORTHO05D006553 5.5e-07 58.2 66 48.5
CiPaw.01G176800 Carya illinoinensis HOM05D001012 ORTHO05D006553 7.2e-07 57.8 58 50.0
Potri.010G064800 Populus trichocarpa HOM05D001012 ORTHO05D006553 7.2e-07 57.8 60 53.3
AUR62002870 Chenopodium quinoa HOM05D001012 ORTHO05D006553 1.6e-06 56.6 67 50.7
FAN16G2551 Fragaria x ananassa HOM05D001012 ORTHO05D006553 1.6e-06 56.6 77 42.9
FAN25G0383 Fragaria x ananassa HOM05D001012 ORTHO05D006553 1.6e-06 56.6 77 42.9
PGR031G3217 Punica granatum HOM05D001012 ORTHO05D006553 1.6e-06 56.6 90 37.8
PGR118G0004 Punica granatum HOM05D001012 ORTHO05D006553 1.6e-06 56.6 90 37.8
QL06p021551 Quercus lobata HOM05D001012 ORTHO05D006553 1.6e-06 56.6 56 51.8
HanXRQChr15g0464561 Helianthus annuus HOM05D001012 ORTHO05D006553 2.7e-06 55.8 74 50.0


User provided reference genes

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