Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002613g0060 Nicotiana tabacum HOM05D001012 ORTHO05D006553 9.7e-37 156.4 83 100.0
Nitab4.5_0001041g0100 Nicotiana tabacum HOM05D001012 ORTHO05D006553 3.1e-27 124.8 68 95.6
Nitab4.5_0005154g0070 Nicotiana tabacum HOM05D001012 ORTHO05D006553 7.0e-27 123.6 68 94.1
Peaxi162Scf00531g00325 Petunia axillaris HOM05D001012 ORTHO05D006553 2.0e-26 122.1 68 92.6
Solyc09g090850.3 Solanum lycopersicum HOM05D001012 ORTHO05D006553 3.8e-25 117.9 68 85.3
Sopen09g033810 Solanum pennellii HOM05D001012 ORTHO05D006553 3.8e-25 117.9 68 85.3
PGSC0003DMG400001554 Solanum tuberosum HOM05D001012 ORTHO05D006553 3.8e-25 117.9 68 85.3
CAN.G812.18 Capsicum annuum HOM05D001012 ORTHO05D006553 1.2e-23 112.8 68 86.8
Cc03_g06470 Coffea canephora HOM05D001012 ORTHO05D006553 2.3e-14 82.0 68 66.2
CSS0001601 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 3.7e-12 74.7 68 63.2
CSS0016929 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 3.7e-12 74.7 68 63.2
CSS0048740 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 4.8e-12 74.3 68 63.2
Haze_11480 Corylus avellana HOM05D001012 ORTHO05D006553 4.8e-12 74.3 70 61.4
Oeu020134.1 Olea europaea HOM05D001012 ORTHO05D006553 6.3e-12 73.9 65 69.2
Oeu047121.1 Olea europaea HOM05D001012 ORTHO05D006553 1.1e-11 73.2 65 66.2
Dinv29795 Davidia involucrata HOM05D001012 ORTHO05D006553 1.4e-11 72.8 68 61.8
MELO3C006368.2 Cucumis melo HOM05D001012 ORTHO05D006553 3.1e-11 71.6 65 63.1
CsaV3_3G011600 Cucumis sativus L. HOM05D001012 ORTHO05D006553 3.1e-11 71.6 65 63.1
CiPaw.02G105800 Carya illinoinensis HOM05D001012 ORTHO05D006553 4.1e-11 71.2 65 58.5
Dinv27122 Davidia involucrata HOM05D001012 ORTHO05D006553 4.1e-11 71.2 68 60.3
Duzib052G0032 Durio zibethinus HOM05D001012 ORTHO05D006553 4.1e-11 71.2 69 58.0
ECA247G2191 Erigeron canadensis HOM05D001012 ORTHO05D006553 4.1e-11 71.2 68 51.5
Thecc.04G266600 Theobroma cacao HOM05D001012 ORTHO05D006553 5.4e-11 70.9 69 58.0
Cfa014796 Carpinus fangiana HOM05D001012 ORTHO05D006553 7.0e-11 70.5 65 61.5
vmacro08563 Vaccinium macrocarpon HOM05D001012 ORTHO05D006553 7.0e-11 70.5 63 58.7
HanXRQChr15g0464561 Helianthus annuus HOM05D001012 ORTHO05D006553 9.1e-11 70.1 68 52.9
Rhsim04G0171000 Rhododendron simsii HOM05D001012 ORTHO05D006553 9.1e-11 70.1 63 58.7
TWI53G2025 Tripterygium wilfordii HOM05D001012 ORTHO05D006553 9.1e-11 70.1 64 59.4
Migut.G00561 Erythranthe guttata HOM05D001012 ORTHO05D006553 2.0e-10 68.9 65 55.4
Duzib151G0254 Durio zibethinus HOM05D001012 ORTHO05D006553 4.5e-10 67.8 69 53.6
Prupe.1G050300 Prunus persica HOM05D001012 ORTHO05D006553 4.5e-10 67.8 65 60.0
Ciclev10006525m.g Citrus clementina HOM05D001012 ORTHO05D006553 5.9e-10 67.4 63 60.3
MD13G1223300 Malus domestica HOM05D001012 ORTHO05D006553 5.9e-10 67.4 65 63.1
QL06p021551 Quercus lobata HOM05D001012 ORTHO05D006553 5.9e-10 67.4 64 62.5
THA.LOC104804645 Tarenaya hassleriana HOM05D001012 ORTHO05D006553 7.7e-10 67.0 63 60.3
THA.LOC104809104 Tarenaya hassleriana HOM05D001012 ORTHO05D006553 7.7e-10 67.0 63 60.3
BcaC08g44307 Brassica carinata HOM05D001012 ORTHO05D006553 1.0e-09 66.6 63 58.7
A05p16540 Brassica napus HOM05D001012 ORTHO05D006553 1.0e-09 66.6 63 58.7
C06p17310 Brassica napus HOM05D001012 ORTHO05D006553 1.0e-09 66.6 63 58.7
BolC6t36927H Brassica oleracea HOM05D001012 ORTHO05D006553 1.0e-09 66.6 63 58.7
BraA05t20558Z Brassica rapa HOM05D001012 ORTHO05D006553 1.0e-09 66.6 63 58.7
Gohir.A09G231000 Gossypium hirsutum HOM05D001012 ORTHO05D006553 1.0e-09 66.6 70 51.4
Gohir.D09G232100 Gossypium hirsutum HOM05D001012 ORTHO05D006553 1.0e-09 66.6 70 51.4
Gorai.006G254900 Gossypium raimondii HOM05D001012 ORTHO05D006553 1.0e-09 66.6 70 51.4
Lj6A637T67 Lonicera japonica HOM05D001012 ORTHO05D006553 1.0e-09 66.6 63 58.7
CANSAT78G1811 Cannabis sativa HOM05D001012 ORTHO05D006553 1.3e-09 66.2 64 59.4
Thhalv10027024m.g Eutrema salsugineum HOM05D001012 ORTHO05D006553 1.3e-09 66.2 63 58.7
Duzib212G1028 Durio zibethinus HOM05D001012 ORTHO05D006553 1.7e-09 65.9 69 53.6
Sp7g11010 Schrenkiella parvula HOM05D001012 ORTHO05D006553 1.7e-09 65.9 63 57.1
Sed0004779 Sechium edule HOM05D001012 ORTHO05D006553 1.7e-09 65.9 68 54.4
Actinidia27094 Actinidia chinensis HOM05D001012 ORTHO05D006553 2.9e-09 65.1 68 60.3
Aa31LG9G4190 Aethionema arabicum HOM05D001012 ORTHO05D006553 2.9e-09 65.1 63 55.6
BcaB04g17687 Brassica carinata HOM05D001012 ORTHO05D006553 2.9e-09 65.1 63 58.7
Carub.0007s2910 Capsella rubella HOM05D001012 ORTHO05D006553 2.9e-09 65.1 63 58.7
Gohir.A02G043500 Gossypium hirsutum HOM05D001012 ORTHO05D006553 3.8e-09 64.7 69 52.2
Gorai.005G054300 Gossypium raimondii HOM05D001012 ORTHO05D006553 3.8e-09 64.7 69 52.2
RcHm_v2.0_Chr4g0395821 Rosa chinensis HOM05D001012 ORTHO05D006553 5.0e-09 64.3 65 55.4
AL9U10100 Arabidopsis lyrata HOM05D001012 ORTHO05D006553 6.5e-09 63.9 62 58.1
AT4G13450 Arabidopsis thaliana HOM05D001012 ORTHO05D006553 6.5e-09 63.9 62 58.1
A08p06800 Brassica napus HOM05D001012 ORTHO05D006553 6.5e-09 63.9 63 57.1
BraA08t32698Z Brassica rapa HOM05D001012 ORTHO05D006553 6.5e-09 63.9 63 57.1
Gohir.D02G049100 Gossypium hirsutum HOM05D001012 ORTHO05D006553 8.5e-09 63.5 69 50.7
MD16G1227600 Malus domestica HOM05D001012 ORTHO05D006553 8.5e-09 63.5 64 60.9
PGR031G3217 Punica granatum HOM05D001012 ORTHO05D006553 8.5e-09 63.5 70 55.7
PGR118G0004 Punica granatum HOM05D001012 ORTHO05D006553 8.5e-09 63.5 70 55.7
AUR62010734 Chenopodium quinoa HOM05D001012 ORTHO05D006553 1.1e-08 63.2 74 50.0
Glyma.08G122800 Glycine max HOM05D001012 ORTHO05D006553 1.5e-08 62.8 71 47.9
Phvul.002G245600 Phaseolus vulgaris HOM05D001012 ORTHO05D006553 1.5e-08 62.8 71 47.9
SalBow3G0364 Salvia bowleyana HOM05D001012 ORTHO05D006553 1.5e-08 62.8 64 51.6
SalBow3G3922 Salvia bowleyana HOM05D001012 ORTHO05D006553 1.5e-08 62.8 64 51.6
BcaB03g16098 Brassica carinata HOM05D001012 ORTHO05D006553 1.9e-08 62.4 63 55.6
Eucgr.H02904 Eucalyptus grandis HOM05D001012 ORTHO05D006553 1.9e-08 62.4 65 56.9
CARHR219090 Cardamine hirsuta HOM05D001012 ORTHO05D006553 2.5e-08 62.0 62 58.1
Nn3g19798 Nelumbo nucifera HOM05D001012 ORTHO05D006553 2.5e-08 62.0 73 52.1
SGA_v2.0_scaffold67G22675 Striga asiatica HOM05D001012 ORTHO05D006553 2.5e-08 62.0 66 51.5
BcaC07g37362 Brassica carinata HOM05D001012 ORTHO05D006553 3.2e-08 61.6 63 55.6
FAN22G2107 Fragaria x ananassa HOM05D001012 ORTHO05D006553 3.2e-08 61.6 66 53.0
Potri.010G064800 Populus trichocarpa HOM05D001012 ORTHO05D006553 4.2e-08 61.2 66 54.5
PGR004G0071 Punica granatum HOM05D001012 ORTHO05D006553 4.2e-08 61.2 63 57.1
FvH4_4g05010 Fragaria vesca HOM05D001012 ORTHO05D006553 5.5e-08 60.8 65 52.3
FAN17G2151 Fragaria x ananassa HOM05D001012 ORTHO05D006553 5.5e-08 60.8 65 52.3
MSTRG.24651 Avicennia marina HOM05D001012 ORTHO05D006553 7.2e-08 60.5 63 50.8
TAR633G0662 Trochodendron aralioides HOM05D001012 ORTHO05D006553 7.2e-08 60.5 63 58.7
A04p08680 Brassica napus HOM05D001012 ORTHO05D006553 9.4e-08 60.1 64 51.6
BraA04t16560Z Brassica rapa HOM05D001012 ORTHO05D006553 9.4e-08 60.1 64 51.6
PSO764G0162 Papaver somniferum HOM05D001012 ORTHO05D006553 9.4e-08 60.1 65 52.3
PSO832G0948 Papaver somniferum HOM05D001012 ORTHO05D006553 9.4e-08 60.1 65 52.3
Lj4g0004868 Lotus japonicus HOM05D001012 ORTHO05D006553 1.2e-07 59.7 73 50.7
FAN12G4090 Fragaria x ananassa HOM05D001012 ORTHO05D006553 2.1e-07 58.9 65 50.8
Glyma.05G165400 Glycine max HOM05D001012 ORTHO05D006553 2.1e-07 58.9 71 40.8
Lalb_Chr12g0204701 Lupinus albus HOM05D001012 ORTHO05D006553 2.1e-07 58.9 71 47.9
ATR0787G200 Amborella trichopoda HOM05D001012 ORTHO05D006553 2.7e-07 58.5 63 47.6
BcaC02g09422 Brassica carinata HOM05D001012 ORTHO05D006553 3.6e-07 58.2 64 50.0
C04p42440 Brassica napus HOM05D001012 ORTHO05D006553 3.6e-07 58.2 64 50.0
BolC4t25823H Brassica oleracea HOM05D001012 ORTHO05D006553 3.6e-07 58.2 64 50.0
Lalb_Chr13g0295511 Lupinus albus HOM05D001012 ORTHO05D006553 3.6e-07 58.2 72 45.8
CiPaw.01G176800 Carya illinoinensis HOM05D001012 ORTHO05D006553 4.7e-07 57.8 64 54.7
Manes.03G157600 Manihot esculenta HOM05D001012 ORTHO05D006553 4.7e-07 57.8 60 50.0
Atru.chr4.1898 Acer truncatum HOM05D001012 ORTHO05D006553 6.1e-07 57.4 61 55.7
MBI10_g16813_MAGBIO Magnolia biondii HOM05D001012 ORTHO05D006553 1.0e-06 56.6 68 42.6
Prupe.6G061400 Prunus persica HOM05D001012 ORTHO05D006553 1.0e-06 56.6 69 44.9
GSVIVG01027936001 Vitis vinifera HOM05D001012 ORTHO05D006553 1.8e-06 55.8 70 48.6
EL10Ac3g06679 Beta vulgaris HOM05D001012 ORTHO05D006553 2.3e-06 55.5 65 49.2
EL10Ac5g12825 Beta vulgaris HOM05D001012 ORTHO05D006553 4.0e-06 54.7 72 43.1
arahy.Tifrunner.gnm1.ann1.G1SBH4 Arachis hypogaea HOM05D001012 ORTHO05D006553 6.8e-06 53.9 68 42.6
arahy.Tifrunner.gnm1.ann1.LF7IV9 Arachis hypogaea HOM05D001012 ORTHO05D006553 6.8e-06 53.9 68 42.6
Lalb_Chr07g0186031 Lupinus albus HOM05D001012 ORTHO05D006553 8.8e-06 53.5 71 42.3
MD11G1081000 Malus domestica HOM05D001012 ORTHO05D006553 8.8e-06 53.5 64 48.4
VMungo0251G0808 Vigna mungo HOM05D001012 ORTHO05D006553 8.8e-06 53.5 71 42.3


User provided reference genes

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