Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 7.4e-84 313.9 170 100.0
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 3.2e-79 298.5 170 93.5
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 3.2e-79 298.5 170 93.5
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 3.2e-79 298.5 170 93.5
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 4.4e-76 288.1 170 90.6
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 7.7e-73 277.3 169 86.4
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.8e-69 266.2 171 80.7
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 4.0e-69 265.0 171 79.5
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 3.4e-68 261.9 171 78.9
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 5.7e-68 261.2 171 78.9
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 9.8e-68 260.4 171 78.4
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 1.7e-67 259.6 171 82.5
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 6.3e-67 257.7 171 77.8
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 6.3e-67 257.7 171 76.6
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 6.3e-67 257.7 171 76.6
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 1.4e-66 256.5 171 76.6
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 3.1e-66 255.4 171 77.2
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 4.1e-66 255.0 171 75.4
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 5.4e-66 254.6 171 78.4
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 5.4e-66 254.6 171 75.4
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 7.0e-66 254.2 171 76.6
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 9.1e-66 253.8 174 77.6
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 3.5e-65 251.9 171 78.4
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 4.5e-65 251.5 171 77.8
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 5.9e-65 251.1 171 78.4
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 1.3e-64 250.0 170 76.5
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 3.8e-64 248.4 171 77.2
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 3.8e-64 248.4 171 76.0
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.0e-64 248.1 173 75.7
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 6.5e-64 247.7 171 78.9
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 8.5e-64 247.3 171 75.4
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 1.1e-63 246.9 171 77.2
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 1.1e-63 246.9 171 75.4
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 2.5e-63 245.7 172 76.7
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 2.5e-63 245.7 172 74.4
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 2.5e-63 245.7 172 74.4
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 2.5e-63 245.7 172 74.4
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 4.2e-63 245.0 176 75.6
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 4.2e-63 245.0 171 74.9
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 4.2e-63 245.0 172 75.0
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 5.5e-63 244.6 171 77.2
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 5.5e-63 244.6 171 77.2
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 7.2e-63 244.2 171 73.7
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 1.2e-62 243.4 170 74.1
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 1.6e-62 243.0 171 76.6
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 1.6e-62 243.0 173 75.7
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 2.1e-62 242.7 175 74.9
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 2.7e-62 242.3 170 76.5
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.7e-62 242.3 162 79.6
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 3.6e-62 241.9 171 77.8
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 3.6e-62 241.9 150 82.0
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 6.1e-62 241.1 171 75.4
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 1.0e-61 240.4 163 77.3
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 1.0e-61 240.4 162 76.5
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 1.4e-61 240.0 171 72.5
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 1.4e-61 240.0 162 76.5
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 6.8e-61 237.7 171 72.5
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 2.0e-60 236.1 165 72.7
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 2.6e-60 235.7 171 74.9
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 2.6e-60 235.7 170 71.2
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 2.6e-60 235.7 170 71.8
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 3.4e-60 235.3 170 72.9
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 4.4e-60 235.0 171 72.5
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 4.4e-60 235.0 169 73.4
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 5.7e-60 234.6 171 71.3
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 9.8e-60 233.8 171 75.4
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 2.2e-59 232.6 165 73.9
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 2.2e-59 232.6 172 70.3
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 3.7e-59 231.9 171 73.1
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 3.7e-59 231.9 171 73.1
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 3.7e-59 231.9 171 73.1
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 4.9e-59 231.5 171 71.3
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 1.4e-58 229.9 171 70.2
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 4.1e-58 228.4 171 71.3
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 9.2e-58 227.3 171 71.3
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 9.2e-58 227.3 176 69.3
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 2.0e-57 226.1 171 71.3
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 2.7e-57 225.7 172 72.1
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 2.7e-57 225.7 172 72.1
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 3.5e-57 225.3 169 71.0
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 7.7e-57 224.2 171 73.1
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 7.7e-57 224.2 172 72.1
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 1.0e-56 223.8 165 71.5
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 2.9e-56 222.2 165 70.9
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 2.9e-56 222.2 190 65.3
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 2.9e-56 222.2 176 67.6
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 3.8e-56 221.9 166 71.1
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 5.0e-56 221.5 166 71.1
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 6.6e-56 221.1 161 70.8
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 8.6e-56 220.7 154 72.7
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.1e-55 220.3 178 68.5
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 1.5e-55 219.9 180 65.6
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.5e-55 219.2 169 65.7
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 2.5e-55 219.2 176 65.9
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 3.3e-55 218.8 169 68.6
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 3.3e-55 218.8 169 68.6
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 3.3e-55 218.8 170 70.6
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 5.6e-55 218.0 188 63.3
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 1.2e-54 216.9 167 70.7
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 1.2e-54 216.9 167 70.7
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 1.2e-54 216.9 167 70.7
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 1.2e-54 216.9 167 70.7
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 1.0e-53 213.8 185 61.6
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 1.4e-53 213.4 182 66.5
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 1.8e-53 213.0 205 62.9
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 5.2e-53 211.5 179 64.8
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 4.9e-51 204.9 171 65.5
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 6.4e-51 204.5 140 76.4
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.8e-50 203.0 136 77.9
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 4.1e-50 201.8 171 63.7
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 5.4e-50 201.4 170 63.5
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 1.2e-49 200.3 171 62.6
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 4.6e-49 198.4 165 63.0
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 4.6e-49 198.4 173 60.1
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 2.3e-48 196.1 162 62.3
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 2.5e-47 192.6 178 59.0
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 1.2e-46 190.3 162 63.6
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 3.6e-46 188.7 152 62.5
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 1.2e-44 183.7 124 78.2
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 7.5e-44 181.0 172 57.6
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 2.3e-40 169.5 166 54.8
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 8.6e-40 167.5 109 73.4
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 5.6e-39 164.9 169 53.3
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.2e-38 163.7 162 54.9
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 4.7e-38 161.8 177 52.0
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 8.1e-38 161.0 178 51.1
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 8.1e-38 161.0 108 78.7
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 3.1e-37 159.1 159 51.6
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 2.6e-36 156.0 170 48.8
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 9.8e-36 154.1 104 75.0
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 3.5e-33 145.6 175 46.9
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 4.6e-33 145.2 171 51.5
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 7.3e-31 137.9 102 70.6
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 1.5e-28 130.2 67 94.0
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 3.4e-28 129.0 163 45.4
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 5.8e-28 128.3 126 55.6
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 1.2e-25 120.6 91 68.1
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 1.2e-20 104.0 81 67.9
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 2.9e-19 99.4 143 37.8
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 1.4e-18 97.1 110 53.6
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 3.9e-16 89.0 147 32.7
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 4.8e-14 82.0 66 71.2
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 9.3e-10 67.8 97 35.1
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 1.6e-09 67.0 142 29.6
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 2.7e-09 66.2 111 35.1
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 4.6e-09 65.5 96 39.6
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 4.6e-09 65.5 166 27.1
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 7.9e-09 64.7 167 26.9
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 2.3e-08 63.2 39 74.4
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 2.3e-08 63.2 39 74.4
BolC2t11481H Brassica oleracea HOM05D004690 ORTHO05D005527 3.9e-08 62.4 38 76.3
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 3.9e-08 62.4 166 31.3
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 5.1e-08 62.0 94 38.3
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 6.7e-08 61.6 173 32.9
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 8.7e-08 61.2 161 28.6
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.5e-07 60.5 170 30.0
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 1.9e-07 60.1 140 27.9
Medtr7g017820 Medicago truncatula HOM05D004690 ORTHO05D005527 1.9e-07 60.1 65 47.7
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 2.5e-07 59.7 96 34.4
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 2.5e-07 59.7 170 27.6
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 3.3e-07 59.3 102 31.4
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 4.3e-07 58.9 170 27.6
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 7.4e-07 58.2 37 75.7
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 7.4e-07 58.2 167 27.5
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 7.4e-07 58.2 45 64.4
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 9.6e-07 57.8 170 27.6
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 2.8e-06 56.2 158 27.8
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 2.8e-06 56.2 95 34.7
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 3.7e-06 55.8 158 27.8
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 3.7e-06 55.8 105 35.2
C06p03190 Brassica napus HOM05D004690 ORTHO05D005527 4.8e-06 55.5 37 67.6
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 4.8e-06 55.5 38 71.1
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 6.2e-06 55.1 144 31.2
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 6.2e-06 55.1 33 81.8


User provided reference genes

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