Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002595g0030 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.6e-90 335.9 149 100.0
Nitab4.5_0000117g0180 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.4e-86 322.0 149 96.0
Solyc01g056760.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 8.0e-58 227.3 150 70.7
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.7e-28 127.5 96 54.2
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 9.6e-27 124.0 96 53.1
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 1.6e-26 123.2 94 52.1
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 5.2e-25 118.2 87 55.2
AUR62036294 Chenopodium quinoa HOM05D003229 ORTHO05D003835 4.4e-24 115.2 96 47.9
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 2.9e-23 112.5 116 43.1
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 4.9e-23 111.7 94 51.1
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 8.4e-23 110.9 93 50.5
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 1.1e-22 110.5 73 56.2
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 1.9e-22 109.8 112 45.5
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 4.2e-22 108.6 101 43.6
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 4.2e-22 108.6 99 46.5
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.2e-21 107.1 79 57.0
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.2e-21 107.1 73 57.5
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 4.6e-21 105.1 114 42.1
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 6.0e-21 104.8 94 45.7
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 6.0e-21 104.8 79 53.2
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 7.8e-21 104.4 72 56.9
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.0e-20 104.0 73 58.9
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 1.3e-20 103.6 73 56.2
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 5.1e-20 101.7 92 48.9
Hund15039 Selenicereus undatus HOM05D003229 ORTHO05D003835 5.1e-20 101.7 93 44.1
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 1.1e-19 100.5 70 55.7
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 1.1e-19 100.5 70 55.7
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 1.5e-19 100.1 113 38.9
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 1.9e-19 99.8 111 39.6
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 2.5e-19 99.4 95 49.5
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 2.5e-19 99.4 73 53.4
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 5.6e-19 98.2 72 52.8
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 5.6e-19 98.2 65 56.9
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 9.6e-19 97.4 99 45.5
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 1.6e-18 96.7 93 45.2
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 2.1e-18 96.3 85 45.9
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 3.6e-18 95.5 69 55.1
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 4.8e-18 95.1 99 46.5
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 6.2e-18 94.7 98 42.9
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 1.1e-17 94.0 73 54.8
MBI05_g37661_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.4e-17 93.6 73 52.1
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.4e-17 93.6 109 39.4
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 1.4e-17 93.6 70 54.3
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.8e-17 93.2 121 37.2
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 2.4e-17 92.8 73 54.8
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 3.1e-17 92.4 72 51.4
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 4.0e-17 92.0 72 54.2
AUR62038407 Chenopodium quinoa HOM05D003229 ORTHO05D003835 4.0e-17 92.0 96 42.7
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 5.3e-17 91.7 65 56.9
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 5.3e-17 91.7 65 56.9
A03p27320 Brassica napus HOM05D003229 ORTHO05D003835 6.9e-17 91.3 96 40.6
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 6.9e-17 91.3 96 40.6
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 6.9e-17 91.3 65 56.9
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 6.9e-17 91.3 96 40.6
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 6.9e-17 91.3 65 56.9
BraA03t11943Z Brassica rapa HOM05D003229 ORTHO05D003835 6.9e-17 91.3 96 40.6
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 6.9e-17 91.3 65 56.9
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 6.9e-17 91.3 65 56.9
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 6.9e-17 91.3 65 56.9
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 9.0e-17 90.9 65 56.9
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.2e-16 90.5 65 56.9
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 1.2e-16 90.5 102 41.2
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 1.2e-16 90.5 113 37.2
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.2e-16 90.5 69 53.6
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 1.5e-16 90.1 96 42.7
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.5e-16 90.1 81 48.1
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 1.5e-16 90.1 82 45.1
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.5e-16 90.1 91 42.9
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 2.6e-16 89.4 65 53.8
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 4.5e-16 88.6 65 56.9
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 9.9e-16 87.4 65 55.4
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 9.9e-16 87.4 80 43.8
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.3e-15 87.0 147 29.9
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 1.3e-15 87.0 70 50.0
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 2.2e-15 86.3 82 47.6
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 2.2e-15 86.3 65 53.8
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 2.2e-15 86.3 62 54.8
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 2.2e-15 86.3 112 37.5
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 8.4e-15 84.3 65 49.2
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 8.4e-15 84.3 91 40.7
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 8.4e-15 84.3 68 52.9
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 1.1e-14 84.0 72 47.2
Thhalv10002930m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.1e-14 84.0 112 36.6
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.1e-14 84.0 70 48.6
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 1.1e-14 84.0 78 46.2
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 1.1e-14 84.0 113 34.5
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 1.9e-14 83.2 69 46.4
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.9e-14 83.2 111 35.1
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.9e-14 83.2 111 35.1
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 1.9e-14 83.2 95 40.0
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.4e-14 82.8 111 35.1
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 2.4e-14 82.8 73 42.5
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 2.4e-14 82.8 73 42.5
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 2.4e-14 82.8 89 39.3
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 3.2e-14 82.4 54 55.6
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 3.2e-14 82.4 114 36.0
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.2e-14 82.0 49 63.3
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 7.1e-14 81.3 65 53.8
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 9.3e-14 80.9 73 42.5
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 9.3e-14 80.9 76 44.7
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 1.2e-13 80.5 63 49.2
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 1.6e-13 80.1 116 34.5
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 1.6e-13 80.1 69 47.8
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 2.1e-13 79.7 86 40.7
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 3.5e-13 79.0 52 57.7
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 3.5e-13 79.0 114 35.1
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.6e-13 78.6 117 33.3
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 4.6e-13 78.6 117 33.3
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 6.0e-13 78.2 90 40.0
Thhalv10023543m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 6.0e-13 78.2 70 44.3
Sopen01g025300 Solanum pennellii HOM05D003229 ORTHO05D003835 6.0e-13 78.2 61 68.9
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 6.0e-13 78.2 52 57.7
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 6.0e-13 78.2 59 50.8
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 7.9e-13 77.8 97 36.1
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 7.9e-13 77.8 115 34.8
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 7.9e-13 77.8 127 32.3
Oeu047795.1 Olea europaea HOM05D003229 ORTHO05D003835 7.9e-13 77.8 55 56.4
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 1.0e-12 77.4 74 51.4
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 1.0e-12 77.4 63 50.8
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.3e-12 77.0 94 36.2
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 1.3e-12 77.0 51 56.9
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.3e-12 77.0 52 55.8
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 2.3e-12 76.3 94 37.2
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 5.1e-12 75.1 45 62.2
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 8.7e-12 74.3 115 33.9
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 8.7e-12 74.3 115 33.9
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 1.1e-11 73.9 77 41.6
AL7G45170 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.5e-11 73.6 88 39.8
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.5e-11 73.6 47 59.6
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 1.9e-11 73.2 98 35.7
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 2.5e-11 72.8 72 43.1
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 2.5e-11 72.8 122 30.3
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 4.3e-11 72.0 69 47.8
SGA_v2.0_scaffold392G50668 Striga asiatica HOM05D003229 ORTHO05D003835 9.6e-11 70.9 120 32.5
Ah.12g059520 Amaranthus hybridus HOM05D003229 ORTHO05D003835 1.3e-10 70.5 96 35.4
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 1.1e-09 67.4 44 56.8
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 4.0e-09 65.5 83 38.6
AT5G36240 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 5.3e-09 65.1 60 45.0
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 9.0e-09 64.3 94 33.0
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 1.5e-08 63.5 75 37.3
CAN.G2071.4 Capsicum annuum HOM05D003229 ORTHO05D003835 2.0e-08 63.2 55 47.3
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 2.6e-08 62.8 97 33.0
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 5.8e-08 61.6 47 48.9
CAN.G10408.1 Capsicum annuum HOM05D003229 ORTHO05D003835 5.8e-08 61.6 56 46.4
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 5.8e-08 61.6 40 55.0
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 7.6e-08 61.2 42 54.8
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 4.9e-07 58.5 67 34.3
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.1e-06 57.4 91 35.2
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 1.1e-06 57.4 113 28.3
SGA_v2.0_scaffold41G15781 Striga asiatica HOM05D003229 ORTHO05D003835 4.2e-06 55.5 46 45.7
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 5.5e-06 55.1 73 31.5
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 5.5e-06 55.1 44 52.3
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 7.1e-06 54.7 114 28.1
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 9.3e-06 54.3 79 35.4


User provided reference genes

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