Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002591g0010 Nicotiana tabacum HOM05D003491 ORTHO05D036541 3.5e-33 144.4 77 100.0
Nitab4.5_0010068g0020 Nicotiana tabacum HOM05D003491 ORTHO05D036541 9.3e-18 93.2 65 84.6
BraA03t15192Z Brassica rapa HOM05D003491 ORTHO05D004293 8.2e-14 80.1 59 78.0
EL10Ac2g02561 Beta vulgaris HOM05D003491 ORTHO05D004293 9.1e-13 76.6 54 79.6
BcaNung04516 Brassica carinata HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
A03p61470 Brassica napus HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
C07p59250 Brassica napus HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
BraA01t00554Z Brassica rapa HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
BraA08t33768Z Brassica rapa HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
CAN.G395.36 Capsicum annuum HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Cpa.g.sc91.29 Carica papaya HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Cfa013196 Carpinus fangiana HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Ca_12922_v3 Cicer arietinum L. HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Cc04_g03810 Coffea canephora HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Haze_21598 Corylus avellana HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Migut.I00813 Erythranthe guttata HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
FvH4_2g29800 Fragaria vesca HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
MBI04_g33817_MAGBIO Magnolia biondii HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Nitab4.5_0000620g0180 Nicotiana tabacum HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Nitab4.5_0009276g0010 Nicotiana tabacum HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Peaxi162Scf00207g00754 Petunia axillaris HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Pp3c12_23580 Physcomitrium patens HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Pp3c3_36670 Physcomitrium patens HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Pp3c4_7470 Physcomitrium patens HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
Pp3c8_3370 Physcomitrium patens HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
RcHm_v2.0_Chr6g0298821 Rosa chinensis HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
SalBow2G1989 Salvia bowleyana HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
TWI32G0730 Tripterygium wilfordii HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
TWI34G0357 Tripterygium wilfordii HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
TWI63G0930 Tripterygium wilfordii HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
HPP92_003644 Vanilla planifolia HOM05D003491 ORTHO05D004293 9.1e-13 76.6 46 91.3
CBR_g48556 Chara braunii HOM05D003491 ORTHO05D004293 1.2e-12 76.3 46 89.1
AUR62041851 Chenopodium quinoa HOM05D003491 ORTHO05D004293 1.2e-12 76.3 47 87.2
Sc23g0006960 Simmondsia chinensis HOM05D003491 ORTHO05D004293 1.2e-12 76.3 46 89.1
CiPaw.07G219300 Carya illinoinensis HOM05D003491 ORTHO05D004293 2.0e-12 75.5 46 89.1
Manes.03G018400 Manihot esculenta HOM05D003491 ORTHO05D004293 2.0e-12 75.5 46 89.1
QL07p015653 Quercus lobata HOM05D003491 ORTHO05D004293 2.0e-12 75.5 46 89.1
unitig_21.g20349 Utricularia gibba HOM05D003491 ORTHO05D004293 2.0e-12 75.5 46 89.1
Actinidia13267 Actinidia chinensis HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Actinidia15699 Actinidia chinensis HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Ah.12g063740 Amaranthus hybridus HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
MSTRG.11107 Avicennia marina HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
MSTRG.22716 Avicennia marina HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
MSTRG.9444 Avicennia marina HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
CSS0016532 Camellia sinensis var. sinensis HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
CSS0031636 Camellia sinensis var. sinensis HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
CANSAT54G2758 Cannabis sativa HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
CDE02G0717 Ceratophyllum demersum HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Ciclev10009643m.g Citrus clementina HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
COL.COLO4_24008 Corchorus olitorius HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
CsaV3_3G046610 Cucumis sativus L. HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
DCAR_006243 Daucus carota HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Dinv11598 Davidia involucrata HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Duzib150G0462 Durio zibethinus HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Duzib168G0366 Durio zibethinus HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
ECA232G3542 Erigeron canadensis HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
ECA233G0626 Erigeron canadensis HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Eucgr.C02831 Eucalyptus grandis HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Gohir.A02G109706 Gossypium hirsutum HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Gohir.A08G091800 Gossypium hirsutum HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Gohir.D03G064500 Gossypium hirsutum HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Gohir.D08G107100 Gossypium hirsutum HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Gorai.004G114500 Gossypium raimondii HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Gorai.013G110300 Gossypium raimondii HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
HanXRQChr03g0081341 Helianthus annuus HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Hma1.2p1_0000F.1_g001030 Hydrangea macrophylla HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Hma1.2p1_0007F.1_g005180 Hydrangea macrophylla HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Lsat_1_v5_gn_4_104721 Lactuca sativa HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Lsat_1_v5_gn_6_21641 Lactuca sativa HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Lj5A66T58 Lonicera japonica HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Lj9A504T65 Lonicera japonica HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Lj5g0005859 Lotus japonicus HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
MD08G1141700 Malus domestica HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
MD15G1118200 Malus domestica HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Manes.16G118100 Manihot esculenta HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Nn1g04228 Nelumbo nucifera HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Oeu052308.2 Olea europaea HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
PSO339G4791 Papaver somniferum HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
PSO801G0434 Papaver somniferum HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Potri.006G248700 Populus trichocarpa HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Potri.018G032600 Populus trichocarpa HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Prupe.1G471600 Prunus persica HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
PGR044G2143 Punica granatum HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Rhsim02G0193000 Rhododendron simsii HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Rhsim07G0146800 Rhododendron simsii HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Sabra06G0194600 Salix brachista HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Sed0008081 Sechium edule HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Sed0016723 Sechium edule HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Hund25698 Selenicereus undatus HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Solyc06g067880.3 Solanum lycopersicum HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Sopen06g025160 Solanum pennellii HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
PGSC0003DMG400007564 Solanum tuberosum HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
PGSC0003DMG400028549 Solanum tuberosum HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
SGA_v2.0_scaffold5G02647 Striga asiatica HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
THA.LOC104803630 Tarenaya hassleriana HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Thecc.09G147300 Theobroma cacao HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
TAR383G0278 Trochodendron aralioides HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
TAR626G1382 Trochodendron aralioides HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
TAR636G0216 Trochodendron aralioides HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
vmacro12625 Vaccinium macrocarpon HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
GSVIVG01017212001 Vitis vinifera HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
GSVIVG01035775001 Vitis vinifera HOM05D003491 ORTHO05D004293 2.6e-12 75.1 46 89.1
Cre12.g529100 Chlamydomonas reinhardtii HOM05D003491 ORTHO05D004293 3.4e-12 74.7 46 82.6
ClCG05G017160 Citrullus lanatus HOM05D003491 ORTHO05D004293 3.4e-12 74.7 46 87.0
Nitab4.5_0000508g0240 Nicotiana tabacum HOM05D003491 ORTHO05D004293 3.4e-12 74.7 46 89.1
Nitab4.5_0002339g0040 Nicotiana tabacum HOM05D003491 ORTHO05D004293 3.4e-12 74.7 46 89.1
CiPaw.08G014200 Carya illinoinensis HOM05D003491 ORTHO05D004293 5.9e-12 73.9 46 87.0
Os01g0610100 Oryza sativa ssp. japonica HOM05D003491 ORTHO05D004293 5.9e-12 73.9 46 87.0
Zm00001eb161810 Zea mays HOM05D003491 ORTHO05D004293 5.9e-12 73.9 46 87.0
Zm00001eb357970 Zea mays HOM05D003491 ORTHO05D004293 5.9e-12 73.9 46 87.0
PRCOL_00000662 Prasinoderma coloniale HOM05D003491 ORTHO05D004293 7.7e-12 73.6 46 87.0
SEGI_03101 Sequoiadendron giganteum HOM05D003491 ORTHO05D004293 1.0e-11 73.2 46 84.8
EL10As1g23116 Beta vulgaris HOM05D003491 ORTHO05D004293 2.2e-11 72.0 46 82.6
Oeu022415.1 Olea europaea HOM05D003491 ORTHO05D004293 6.5e-11 70.5 51 76.5
Lalb_Chr24g0402261 Lupinus albus HOM05D003491 ORTHO05D036541 8.5e-11 70.1 46 84.8
ClCG08G013010 Citrullus lanatus HOM05D003491 ORTHO05D004293 1.4e-10 69.3 43 88.4
MELO3C011225.2 Cucumis melo HOM05D003491 ORTHO05D004293 1.4e-10 69.3 43 88.4
CsaV3_2G031740 Cucumis sativus L. HOM05D003491 ORTHO05D004293 1.4e-10 69.3 43 88.4
Sed0021950 Sechium edule HOM05D003491 ORTHO05D004293 1.4e-10 69.3 43 88.4
Atru.chr7.2353 Acer truncatum HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
Aa31LG10G10670 Aethionema arabicum HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
AL4G17080 Arabidopsis lyrata HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
AL7G19280 Arabidopsis lyrata HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
AT2G25610 Arabidopsis thaliana HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
AT4G32530 Arabidopsis thaliana HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
BcaB03g12749 Brassica carinata HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
BcaC01g01019 Brassica carinata HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
BcaC09g52042 Brassica carinata HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
A01p05870 Brassica napus HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
A08p18150 Brassica napus HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
C01p06490 Brassica napus HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
C03p87310 Brassica napus HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
BolC1t00643H Brassica oleracea HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
BolC3t21031H Brassica oleracea HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
Carub.0004s0534 Capsella rubella HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
Carub.0007s0805 Capsella rubella HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
CAN.G211.2 Capsicum annuum HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
CARHR240460 Cardamine hirsuta HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
Thhalv10000341m.g Eutrema salsugineum HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
Thhalv10026373m.g Eutrema salsugineum HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
HanXRQChr02g0050661 Helianthus annuus HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
HanXRQChr13g0402461 Helianthus annuus HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
Mapoly0016s0012 Marchantia polymorpha HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
Peaxi162Scf00251g01120 Petunia axillaris HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
Sp4g05100 Schrenkiella parvula HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
Sp7g30300 Schrenkiella parvula HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
SMO117G0315 Selaginella moellendorffii HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
Solyc08g067480.4 Solanum lycopersicum HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
Sopen08g021420 Solanum pennellii HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
PGSC0003DMG400025542 Solanum tuberosum HOM05D003491 ORTHO05D004293 1.9e-10 68.9 41 92.7
vmacro11129 Vaccinium macrocarpon HOM05D003491 ORTHO05D004293 1.9e-10 68.9 46 84.8
HPP92_003632 Vanilla planifolia HOM05D003491 ORTHO05D004293 4.2e-10 67.8 38 92.1
ATR0083G021 Amborella trichopoda HOM05D003491 ORTHO05D004293 5.5e-10 67.4 41 90.2
Aqoxy7G01963 Aquilegia oxysepala HOM05D003491 ORTHO05D004293 5.5e-10 67.4 41 90.2
AUR62032356 Chenopodium quinoa HOM05D003491 ORTHO05D004293 5.5e-10 67.4 41 90.2
Glyma.14G127600 Glycine max HOM05D003491 ORTHO05D004293 5.5e-10 67.4 41 90.2
Glyma.17G206600 Glycine max HOM05D003491 ORTHO05D004293 5.5e-10 67.4 41 90.2
Lalb_Chr14g0361951 Lupinus albus HOM05D003491 ORTHO05D004293 5.5e-10 67.4 41 90.2
Medtr7g090330 Medicago truncatula HOM05D003491 ORTHO05D004293 5.5e-10 67.4 41 90.2
Phvul.001G054000 Phaseolus vulgaris HOM05D003491 ORTHO05D004293 5.5e-10 67.4 41 90.2
Psat6g030160 Pisum sativum HOM05D003491 ORTHO05D004293 5.5e-10 67.4 41 90.2
THA.LOC104803825 Tarenaya hassleriana HOM05D003491 ORTHO05D004293 5.5e-10 67.4 41 90.2
TPR.G15667 Trifolium pratense HOM05D003491 ORTHO05D004293 5.5e-10 67.4 41 90.2
VMungo0647G2507 Vigna mungo HOM05D003491 ORTHO05D004293 5.5e-10 67.4 41 90.2
MELO3C003677.2 Cucumis melo HOM05D003491 ORTHO05D004293 1.2e-09 66.2 38 89.5
arahy.Tifrunner.gnm1.ann1.ED147J Arachis hypogaea HOM05D003491 ORTHO05D004293 1.6e-09 65.9 40 90.0
arahy.Tifrunner.gnm1.ann1.IM4PDC Arachis hypogaea HOM05D003491 ORTHO05D004293 1.6e-09 65.9 40 90.0
arahy.Tifrunner.gnm1.ann1.MW4ZUP Arachis hypogaea HOM05D003491 ORTHO05D004293 1.6e-09 65.9 40 90.0
arahy.Tifrunner.gnm1.ann1.VD8BDW Arachis hypogaea HOM05D003491 ORTHO05D004293 1.6e-09 65.9 40 90.0
Sabra18G0033300 Salix brachista HOM05D003491 ORTHO05D349818 2.3e-08 62.0 53 69.8
SGA_v2.0_scaffold37G14799 Striga asiatica HOM05D003491 ORTHO05D004293 6.7e-08 60.5 37 89.2
AagrBONN_evm.TU.Sc2ySwM_344.4191 Anthoceros agrestis HOM05D003491 ORTHO05D004293 8.8e-08 60.1 50 68.0
Actinidia14629 Actinidia chinensis HOM05D003491 ORTHO05D004293 2.2e-06 55.5 47 72.3


User provided reference genes

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