Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 0.0e+00 1109.0 582 100.0
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.4e-307 1058.1 589 95.1
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.6e-273 943.7 586 82.8
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 8.9e-270 933.3 592 81.8
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 5.4e-267 924.1 595 82.9
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.9e-204 715.7 590 64.9
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 2.8e-199 699.1 571 65.3
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 3.1e-198 695.7 586 62.3
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 2.0e-197 693.0 600 62.8
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 7.9e-194 681.0 569 63.8
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 5.1e-193 678.3 586 60.8
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.7e-191 673.3 576 60.6
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.7e-191 673.3 606 60.6
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 4.8e-191 671.8 576 60.9
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 9.1e-190 667.5 583 62.3
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 9.1e-190 667.5 564 62.8
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.2e-189 667.2 579 61.3
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.5e-189 666.8 570 62.5
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 4.5e-189 665.2 599 60.3
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 2.2e-188 662.9 581 61.8
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 5.5e-187 658.3 594 60.4
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 7.2e-187 657.9 577 59.8
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 2.7e-186 656.0 578 59.3
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 6.1e-186 654.8 588 59.0
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 1.8e-185 653.3 548 62.0
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.3e-185 652.9 561 61.5
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 5.2e-185 651.7 599 59.3
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.1e-184 650.6 578 59.3
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 5.7e-184 648.3 571 61.1
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 9.7e-184 647.5 558 60.6
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 2.8e-183 646.0 559 62.6
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 2.8e-183 646.0 549 60.7
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 3.7e-183 645.6 563 59.1
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 3.1e-182 642.5 579 61.0
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 7.0e-182 641.3 566 59.2
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 1.2e-181 640.6 569 60.6
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 5.9e-181 638.3 557 59.8
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.3e-180 637.1 584 59.8
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 6.5e-180 634.8 531 64.0
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 2.5e-179 632.9 647 55.8
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 3.2e-179 632.5 620 54.8
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 7.2e-179 631.3 589 59.4
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 3.6e-178 629.0 556 59.2
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.6e-178 629.0 574 59.9
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 4.7e-178 628.6 557 62.7
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.8e-177 626.7 636 55.2
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.2e-177 625.2 556 59.0
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.2e-177 625.2 552 60.9
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.5e-176 623.6 574 59.8
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.3e-175 620.5 556 58.3
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 6.3e-175 618.2 569 59.2
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.9e-173 611.7 568 57.6
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 7.7e-173 611.3 562 60.0
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.0e-172 610.9 557 58.3
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.7e-172 610.1 537 58.8
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 8.5e-172 607.8 618 55.0
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 9.4e-171 604.4 557 58.0
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 1.2e-170 604.0 576 58.0
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.8e-169 600.1 566 56.4
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.8e-169 600.1 512 61.9
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.0e-169 599.4 566 56.9
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 3.0e-169 599.4 582 56.0
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.0e-169 599.0 566 56.9
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 8.8e-169 597.8 523 60.4
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.2e-168 597.4 490 67.8
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 7.5e-168 594.7 566 56.7
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.7e-167 593.6 598 55.7
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 5.4e-166 588.6 587 55.7
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.7e-165 586.3 570 56.5
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 3.8e-164 582.4 589 54.3
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 6.5e-164 581.6 629 52.0
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.2e-163 578.9 588 53.7
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 9.5e-163 577.8 571 55.7
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.6e-162 577.0 423 68.3
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.0e-161 574.3 596 54.4
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.7e-160 568.5 584 53.1
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.3e-159 567.4 688 49.6
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 2.2e-159 566.6 573 55.7
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 3.1e-158 562.8 560 56.1
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 5.4e-158 562.0 565 55.2
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.5e-157 559.3 562 55.2
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.3e-156 557.4 651 49.5
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.3e-156 556.6 591 52.5
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 2.5e-155 553.1 619 51.9
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.8e-154 549.7 555 55.3
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.0e-153 547.7 590 53.1
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.4e-153 547.4 580 54.8
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 2.3e-153 546.6 580 53.4
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 5.2e-153 545.4 368 69.6
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 6.8e-153 545.0 577 53.6
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 8.9e-153 544.7 579 53.2
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 8.9e-153 544.7 582 52.6
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.5e-152 543.9 456 60.1
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 5.7e-152 542.0 367 68.9
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 7.5e-152 541.6 556 52.7
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 6.4e-151 538.5 579 55.3
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 8.3e-151 538.1 576 51.9
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 4.1e-150 535.8 575 52.2
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 5.4e-150 535.4 588 51.7
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.2e-149 534.3 575 52.0
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.7e-149 533.1 586 52.9
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.0e-148 531.2 577 51.6
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 8.3e-143 511.5 528 50.2
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 7.0e-142 508.4 362 66.9
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.0e-141 506.9 570 51.1
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 6.0e-141 505.4 585 48.2
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.0e-140 503.1 464 60.3
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 6.6e-140 501.9 574 49.5
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.4e-137 494.2 564 50.4
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 3.1e-137 493.0 575 48.9
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.2e-136 491.1 600 50.2
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 9.9e-136 488.0 571 47.3
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.3e-135 487.6 593 47.4
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 7.1e-134 481.9 360 62.2
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 2.1e-133 480.3 299 75.3
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.1e-131 474.6 553 47.9
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 7.3e-131 471.9 450 53.1
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.6e-128 463.4 314 67.5
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 4.4e-128 462.6 603 45.4
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 8.6e-124 448.4 515 48.9
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 4.3e-123 446.0 337 63.8
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 4.2e-118 429.5 479 51.4
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.3e-116 423.7 267 76.0
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 1.6e-114 417.5 373 54.2
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.8e-113 414.1 515 46.8
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.4e-113 413.7 364 53.3
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 5.8e-112 409.1 364 52.7
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.6e-109 401.0 374 52.1
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 6.0e-109 399.1 528 45.5
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.8e-108 397.5 609 39.9
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 2.3e-108 397.1 591 40.3
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 6.7e-108 395.6 590 40.2
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.5e-107 394.4 612 39.2
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.9e-107 394.0 364 52.2
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.9e-107 394.0 580 39.5
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 4.3e-107 392.9 585 39.0
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.1e-106 390.6 586 39.1
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 3.7e-106 389.8 586 39.1
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 5.3e-105 386.0 278 62.2
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 4.9e-103 379.4 307 60.3
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.2e-102 376.7 299 56.5
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 4.2e-102 376.3 592 38.9
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 4.2e-102 376.3 592 38.9
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 3.9e-100 369.8 386 49.7
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 8.7e-100 368.6 579 37.5
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 8.7e-100 368.6 579 37.5
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.1e-99 368.2 423 45.6
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.1e-97 360.1 228 71.1
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.9e-94 350.9 393 52.9
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.0e-87 328.6 208 75.0
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.9e-86 324.3 208 74.0
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 2.7e-85 320.5 351 55.6
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 2.8e-82 310.5 297 49.2
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.1e-77 294.3 327 52.9
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 2.7e-77 293.9 593 37.9
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 6.5e-63 246.1 299 52.2
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 5.2e-60 236.5 623 33.4
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.0e-59 234.6 578 34.6
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 3.1e-49 200.7 166 57.2
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 4.5e-48 196.8 348 39.1
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 4.0e-44 183.7 125 64.8
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.8e-42 177.6 104 77.9
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 3.8e-39 167.2 138 58.7
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 9.5e-38 162.5 285 35.4
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.7e-34 151.8 83 86.7
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 9.5e-30 136.0 82 73.2
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 3.2e-25 120.9 69 82.6
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 5.4e-25 120.2 65 87.7
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.0e-23 115.9 93 57.0
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 1.3e-23 115.5 98 53.1
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 4.7e-21 107.1 282 35.1
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 6.6e-15 86.7 267 32.2
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 9.9e-11 72.8 297 29.6
Lj5C87T10 Lonicera japonica HOM05D003971 ORTHO05D235896 7.3e-06 56.6 77 50.6


User provided reference genes

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