Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 3.9e-188 661.4 347 100.0
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 1.5e-102 377.1 343 63.3
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 1.6e-101 373.6 332 62.7
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 4.7e-101 372.1 343 62.4
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 3.0e-100 369.4 347 61.7
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.2e-99 367.5 346 63.6
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 2.7e-72 276.6 334 50.9
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 1.3e-61 241.1 305 47.5
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 2.4e-60 236.9 336 45.5
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.1e-57 228.0 343 42.9
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 1.0e-55 221.5 358 40.2
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.3e-55 221.1 343 42.0
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 1.1e-54 218.0 356 39.6
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.5e-54 217.6 352 40.1
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 7.3e-54 215.3 347 37.5
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.3e-53 214.5 335 40.9
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 1.1e-52 211.5 337 40.7
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 1.4e-52 211.1 362 38.1
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 6.9e-52 208.8 234 56.4
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 2.0e-51 207.2 355 39.2
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 3.4e-51 206.5 358 37.7
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 5.8e-51 205.7 300 40.3
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 2.9e-50 203.4 358 37.4
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 4.9e-50 202.6 333 38.7
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 4.9e-50 202.6 346 41.0
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 8.4e-50 201.8 344 39.8
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 1.1e-49 201.4 344 41.0
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.4e-49 201.1 334 41.6
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 1.4e-49 201.1 331 39.9
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.4e-49 201.1 321 37.1
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 2.4e-49 200.3 346 37.9
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.2e-49 199.9 339 38.6
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 5.4e-49 199.1 346 35.5
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 9.3e-49 198.4 352 38.1
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.7e-48 196.8 333 38.4
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.0e-47 194.9 359 37.3
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.0e-47 194.9 337 38.0
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 1.3e-47 194.5 270 41.1
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.3e-47 194.5 358 37.4
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 1.8e-47 194.1 340 37.6
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 2.3e-47 193.7 337 41.8
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 2.3e-47 193.7 368 37.0
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 3.0e-47 193.4 359 36.5
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 3.9e-47 193.0 336 41.4
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 3.9e-47 193.0 304 45.4
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 5.1e-47 192.6 345 38.0
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.5e-46 191.0 355 37.7
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.5e-46 190.3 344 37.2
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.3e-46 189.9 344 36.6
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 7.4e-46 188.7 348 36.8
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 9.6e-46 188.3 344 36.3
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.7e-45 186.4 358 36.9
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 6.2e-45 185.7 350 35.4
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.4e-44 184.5 338 34.9
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 1.8e-44 184.1 334 35.9
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 3.4e-43 179.9 304 40.8
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.0e-42 178.3 346 37.0
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 3.8e-42 176.4 340 37.1
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 6.5e-42 175.6 311 40.2
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 8.4e-42 175.3 347 36.6
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 8.4e-42 175.3 337 35.9
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.1e-41 174.9 328 36.3
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.2e-41 173.3 281 38.4
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.6e-40 171.0 325 34.5
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.0e-39 168.3 330 36.4
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.3e-39 167.9 359 35.7
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 1.3e-39 167.9 326 34.0
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 1.3e-39 167.9 333 34.2
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 5.1e-39 166.0 325 35.4
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 8.7e-39 165.2 256 38.3
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 1.1e-38 164.9 358 38.0
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 2.5e-38 163.7 320 35.9
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 3.3e-38 163.3 331 34.7
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 5.7e-38 162.5 329 35.3
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 9.6e-38 161.8 245 37.6
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.3e-37 161.4 324 36.7
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 3.7e-37 159.8 365 33.4
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 4.8e-37 159.5 322 35.4
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 6.2e-37 159.1 366 35.5
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 8.2e-37 158.7 360 34.7
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.1e-36 158.3 329 32.8
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 1.1e-36 158.3 358 34.9
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 1.8e-36 157.5 329 34.0
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 1.8e-36 157.5 357 34.5
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 1.8e-36 157.5 358 37.2
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 4.1e-36 156.4 307 33.9
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 4.1e-36 156.4 356 33.1
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 2.0e-35 154.1 354 35.6
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 3.4e-35 153.3 310 33.5
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 3.4e-35 153.3 356 33.7
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 7.6e-35 152.1 302 33.4
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.7e-34 151.0 316 32.9
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 2.2e-34 150.6 279 34.8
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 5.0e-34 149.4 347 34.0
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 8.4e-34 148.7 330 33.3
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 2.5e-33 147.1 313 31.9
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 5.5e-33 146.0 327 33.0
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 5.5e-33 146.0 324 34.9
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 9.3e-33 145.2 214 41.1
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 9.3e-33 145.2 323 31.9
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 3.5e-32 143.3 347 34.0
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 1.0e-31 141.7 334 32.0
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.3e-31 141.4 334 30.8
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 1.8e-31 141.0 304 34.5
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 2.3e-31 140.6 323 31.0
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 6.7e-31 139.0 333 30.6
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 1.6e-29 134.4 348 30.2
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 1.6e-29 134.4 249 33.7
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 2.2e-29 134.0 329 29.2
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 3.7e-29 133.3 271 31.4
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 8.2e-29 132.1 346 31.5
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.1e-28 131.7 354 31.6
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 4.1e-28 129.8 363 30.6
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 9.0e-28 128.6 332 30.4
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 4.5e-27 126.3 347 28.8
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 8.5e-26 122.1 330 30.3
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 9.4e-25 118.6 259 36.3
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 2.1e-24 117.5 327 29.4
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 6.1e-24 115.9 327 29.4
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 6.1e-24 115.9 216 33.3
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 3.0e-23 113.6 191 39.8
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 5.1e-23 112.8 221 36.7
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 6.7e-23 112.5 185 39.5
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 2.5e-22 110.5 368 31.2
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 3.3e-22 110.2 189 41.3
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 2.4e-20 104.0 229 30.6
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 5.9e-19 99.4 363 26.4
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 3.8e-18 96.7 338 25.7
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 1.0e-15 88.6 254 26.4
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 5.7e-14 82.8 115 37.4
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 7.4e-14 82.4 353 25.8
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 3.7e-13 80.1 190 30.5
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 6.3e-13 79.3 149 38.3
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 7.7e-11 72.4 96 37.5
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 1.0e-10 72.0 274 28.1
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 5.5e-09 66.2 216 25.5
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 2.3e-07 60.8 78 39.7
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 8.8e-07 58.9 199 27.1


User provided reference genes

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