Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 9.6e-86 320.1 158 100.0
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.4e-84 315.5 158 98.7
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 8.7e-79 297.0 158 92.4
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 8.7e-79 297.0 158 92.4
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.9e-78 295.8 158 91.8
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 2.8e-77 292.0 158 89.9
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 7.7e-75 283.9 158 87.3
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 6.7e-71 270.8 158 87.3
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 4.1e-68 261.5 156 79.5
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 4.1e-68 261.5 156 79.5
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 4.1e-68 261.5 158 77.8
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 1.2e-67 260.0 155 81.3
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 2.0e-67 259.2 154 83.1
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.0e-66 256.9 158 76.6
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.0e-66 256.9 156 78.2
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.3e-66 256.5 158 76.6
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 1.7e-66 256.1 156 77.6
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.7e-66 256.1 156 77.6
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 8.5e-66 253.8 156 77.6
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 3.2e-65 251.9 158 75.9
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 3.2e-65 251.9 156 75.6
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 4.2e-65 251.5 155 74.8
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 2.1e-64 249.2 156 73.1
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 2.1e-64 249.2 156 75.6
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 2.7e-64 248.8 156 74.4
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 2.7e-64 248.8 156 74.4
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 3.6e-64 248.4 156 74.4
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 3.6e-64 248.4 156 75.0
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 3.6e-64 248.4 156 74.4
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 7.9e-64 247.3 156 74.4
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.4e-63 246.5 156 75.6
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.4e-63 246.5 157 73.9
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.8e-63 246.1 158 76.6
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 3.0e-63 245.4 154 76.6
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.0e-63 245.4 152 77.0
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 6.7e-63 244.2 156 74.4
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 8.8e-63 243.8 154 76.0
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.5e-62 243.0 154 73.4
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.5e-62 243.0 154 74.7
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 2.0e-62 242.7 156 73.1
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 3.3e-62 241.9 154 72.7
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.4e-62 241.5 158 74.1
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 4.4e-62 241.5 158 74.1
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 5.7e-62 241.1 158 72.8
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 5.7e-62 241.1 156 74.4
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 9.7e-62 240.4 156 74.4
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 9.7e-62 240.4 156 74.4
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 9.7e-62 240.4 156 74.4
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 9.7e-62 240.4 153 74.5
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 4.8e-61 238.0 156 73.7
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 4.8e-61 238.0 163 70.6
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 8.2e-61 237.3 156 73.7
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 1.4e-60 236.5 156 71.8
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.8e-60 236.1 155 70.3
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 2.4e-60 235.7 154 70.8
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 9.1e-60 233.8 156 69.9
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.2e-59 233.4 154 70.8
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.6e-59 233.0 152 73.7
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.6e-59 233.0 152 73.7
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 1.6e-59 233.0 158 72.8
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-59 233.0 164 70.7
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.7e-58 229.6 156 69.9
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 2.2e-58 229.2 159 73.0
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 2.2e-58 229.2 153 71.2
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 5.0e-58 228.0 153 69.9
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 1.9e-57 226.1 154 68.8
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 3.2e-57 225.3 156 68.6
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 3.2e-57 225.3 156 68.6
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 3.2e-57 225.3 156 68.6
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 4.2e-57 224.9 163 69.9
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 5.5e-57 224.6 156 67.9
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 5.5e-57 224.6 156 70.5
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 5.5e-57 224.6 152 72.4
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 7.2e-57 224.2 152 71.7
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 9.4e-57 223.8 200 59.0
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 1.2e-56 223.4 156 67.9
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 1.2e-56 223.4 156 67.9
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 1.2e-56 223.4 154 70.8
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 4.7e-56 221.5 152 70.4
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.0e-55 218.8 154 69.5
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 4.0e-55 218.4 154 70.1
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 6.7e-55 217.6 156 66.0
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.1e-54 216.9 156 66.7
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 1.5e-54 216.5 156 65.4
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 7.5e-54 214.2 152 70.4
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 2.8e-53 212.2 152 68.4
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.8e-52 209.5 156 63.5
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.8e-52 209.5 156 66.0
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.2e-51 206.8 156 64.1
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 8.5e-50 200.7 152 64.5
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.5e-49 199.9 156 62.2
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 1.2e-48 196.8 154 64.3
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 3.6e-48 195.3 141 66.0
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 5.7e-46 188.0 156 62.8
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 1.3e-45 186.8 158 60.8
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 1.1e-41 173.7 89 89.9
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.6e-40 169.9 110 70.9
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.3e-37 160.2 160 53.8
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 1.1e-36 157.1 156 53.2
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-36 157.1 159 57.2
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.3e-34 150.2 162 45.7
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 5.0e-34 148.3 157 49.0
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.5e-33 146.7 156 52.6
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 8.0e-32 141.0 187 45.5
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 8.0e-32 141.0 187 45.5
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 5.2e-31 138.3 156 46.2
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.3e-29 133.7 73 80.8
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.3e-29 133.7 73 79.5
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 7.0e-28 127.9 156 44.2
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 9.2e-28 127.5 95 65.3
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 4.6e-27 125.2 156 44.9
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 7.8e-27 124.4 158 44.9
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 4.3e-25 118.6 150 45.3
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.8e-23 113.2 149 43.0
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.3e-23 112.8 156 42.3
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 4.0e-23 112.1 159 39.6
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 8.3e-21 104.4 173 37.6
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.2e-19 100.5 84 54.8
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 1.6e-19 100.1 149 38.9
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 6.0e-19 98.2 73 65.8
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 1.3e-18 97.1 156 38.5
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 4.3e-17 92.0 84 57.1
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 3.0e-10 69.3 37 86.5
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 3.0e-10 69.3 37 86.5
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 5.1e-10 68.6 66 50.0
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 6.6e-10 68.2 201 28.9
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 8.6e-10 67.8 68 50.0
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-07 60.1 35 80.0
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-06 55.5 55 52.7
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 7.6e-06 54.7 29 82.8


User provided reference genes

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