Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.6e-266 922.2 456 100.0
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 1.1e-182 643.7 456 73.5
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 2.4e-182 642.5 456 73.2
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 3.5e-181 638.6 456 72.4
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 1.0e-180 637.1 456 72.8
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.2e-176 623.6 476 69.7
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.6e-176 622.5 570 61.8
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 2.3e-140 503.1 449 61.2
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 5.9e-136 488.4 453 57.8
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 3.8e-135 485.7 447 56.6
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 1.6e-133 480.3 457 55.6
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 3.4e-131 472.6 419 58.9
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 4.4e-131 472.2 419 58.9
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 8.3e-130 468.0 442 53.8
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 3.6e-125 452.6 448 53.3
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 4.7e-125 452.2 460 51.3
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.4e-124 450.7 442 52.9
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 3.0e-124 449.5 449 52.3
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 2.6e-123 446.4 437 54.2
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 2.6e-123 446.4 446 52.0
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 1.7e-122 443.7 446 52.7
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.4e-121 439.9 451 51.2
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 4.1e-121 439.1 451 54.1
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 3.5e-120 436.0 459 50.8
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.7e-119 433.7 447 52.8
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 4.3e-118 429.1 444 51.4
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 1.0e-116 424.5 393 54.7
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 4.4e-115 419.1 446 51.6
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 4.9e-114 415.6 501 47.3
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 4.9e-114 415.6 448 49.6
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 6.6e-111 405.2 452 50.4
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 5.6e-110 402.1 449 50.1
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 4.7e-109 399.1 447 49.0
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 1.1e-108 397.9 444 49.5
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 4.0e-108 396.0 400 53.0
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.5e-107 394.0 442 47.3
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 1.5e-107 394.0 446 48.7
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 3.4e-107 392.9 455 49.0
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 8.3e-106 388.3 443 44.9
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 3.2e-105 386.3 444 48.4
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 2.0e-104 383.6 469 46.1
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 3.5e-104 382.9 414 49.0
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 2.3e-103 380.2 444 48.9
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.3e-103 380.2 471 43.9
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.5e-102 377.5 452 47.3
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.5e-102 376.7 444 44.1
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 9.5e-102 374.8 458 44.8
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 4.0e-100 369.4 404 50.5
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 4.0e-100 369.4 408 50.7
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.2e-98 363.6 441 46.9
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 4.9e-98 362.5 415 48.9
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.1e-97 361.3 451 44.1
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.9e-97 360.5 442 45.0
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 2.4e-97 360.1 523 41.3
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 9.2e-97 358.2 450 44.4
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 4.6e-96 355.9 403 45.7
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 6.0e-96 355.5 444 43.5
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 6.0e-96 355.5 405 49.4
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 6.0e-96 355.5 454 43.4
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 6.0e-96 355.5 330 59.7
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.3e-95 353.6 431 43.2
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 6.6e-95 352.1 446 43.3
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 5.6e-94 349.0 472 45.1
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 6.2e-93 345.5 332 56.0
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 5.2e-92 342.4 411 44.3
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 5.8e-91 339.0 403 44.9
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 9.9e-91 338.2 249 66.7
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 1.7e-90 337.4 405 45.2
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 1.7e-90 337.4 405 45.2
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.9e-89 334.0 405 44.9
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 6.6e-87 325.5 360 49.2
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 2.8e-85 320.1 413 46.0
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.8e-85 320.1 232 69.4
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.1e-81 308.1 429 39.2
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 5.4e-81 305.8 322 53.1
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 9.3e-81 305.1 457 41.1
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 6.0e-80 302.4 334 48.2
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 5.8e-75 285.8 360 47.8
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 2.9e-74 283.5 332 47.3
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 8.4e-74 282.0 337 50.1
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 2.4e-73 280.4 440 39.3
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 1.6e-72 277.7 461 38.2
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 2.1e-72 277.3 306 49.7
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 3.9e-71 273.1 406 40.4
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 2.2e-66 257.3 234 56.4
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 7.1e-65 252.3 305 48.5
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 3.0e-63 246.9 331 40.2
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.8e-60 237.7 314 43.6
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 5.3e-60 236.1 293 46.1
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.2e-59 235.0 293 45.7
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 2.0e-59 234.2 321 43.3
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 2.6e-59 233.8 319 44.2
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 2.7e-56 223.8 306 45.1
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.3e-55 221.5 329 37.7
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 1.3e-55 221.5 236 50.4
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 5.1e-55 219.5 337 43.6
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 5.1e-55 219.5 325 40.3
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.5e-54 217.2 337 39.2
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 7.4e-54 215.7 292 43.5
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 2.2e-53 214.2 298 44.6
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 2.4e-52 210.7 306 43.5
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 4.1e-52 209.9 289 43.3
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.0e-51 207.6 289 41.9
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.0e-50 205.3 234 48.7
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.3e-50 204.9 301 42.2
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 2.9e-50 203.8 289 42.6
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 3.8e-50 203.4 289 41.5
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 3.8e-50 203.4 302 44.4
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 6.5e-50 202.6 294 43.5
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 2.5e-49 200.7 301 43.5
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 2.5e-49 200.7 239 47.3
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 3.2e-49 200.3 301 42.2
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 5.5e-49 199.5 301 43.5
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 5.5e-49 199.5 301 43.2
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 9.4e-49 198.7 309 40.5
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 2.7e-48 197.2 301 41.2
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 1.4e-47 194.9 298 43.3
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 3.0e-47 193.7 334 37.7
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 3.9e-47 193.4 298 43.0
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 8.8e-47 192.2 257 45.1
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.5e-46 191.4 294 42.9
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 3.3e-46 190.3 301 41.5
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 9.7e-46 188.7 289 41.5
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 8.2e-45 185.7 303 40.6
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 1.1e-44 185.3 302 42.4
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.1e-44 185.3 294 40.8
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.1e-44 183.7 301 41.2
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.9e-41 174.5 198 48.5
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 9.4e-41 172.2 127 66.9
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 1.2e-40 171.8 335 34.0
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 2.1e-40 171.0 127 67.7
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.4e-36 157.5 183 51.4
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 1.5e-35 154.8 175 48.0
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.4e-33 148.3 323 31.6
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.1e-30 138.7 253 35.2
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 5.3e-28 129.8 256 33.2
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 4.5e-27 126.7 91 64.8
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 6.7e-23 112.8 198 40.9
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 4.8e-21 106.7 83 57.8
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 4.1e-20 103.6 134 42.5
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 5.3e-20 103.2 296 28.0
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 3.2e-17 94.0 85 57.6
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 4.4e-14 83.6 120 40.8
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 1.2e-11 75.5 120 36.7
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 5.9e-11 73.2 54 70.4
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.1e-09 68.9 131 37.4
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 1.5e-09 68.6 82 45.1
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 1.9e-09 68.2 77 46.8
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 4.2e-09 67.0 81 43.2
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 2.3e-07 61.2 91 37.4
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 4.0e-07 60.5 144 31.9


User provided reference genes

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