Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.5e-95 352.8 179 100.0
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 8.1e-89 330.5 181 94.5
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 1.1e-74 283.5 185 80.0
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 1.1e-74 283.5 179 82.7
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 3.3e-74 282.0 181 80.7
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 1.5e-71 273.1 196 74.0
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 7.1e-69 264.2 179 78.2
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 9.3e-61 237.3 175 71.4
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 6.0e-60 234.6 175 69.1
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 7.9e-60 234.2 173 68.8
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.0e-59 233.8 180 70.0
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 4.8e-57 224.9 179 67.0
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 8.2e-57 224.2 179 62.0
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 1.1e-56 223.8 179 65.4
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 4.0e-56 221.9 120 92.5
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.7e-54 216.5 180 62.8
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 5.0e-54 214.9 181 63.0
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 5.0e-54 214.9 177 63.3
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 6.5e-54 214.5 179 60.3
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.9e-53 213.0 179 63.1
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 2.5e-53 212.6 180 61.7
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 4.2e-53 211.8 179 60.9
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 7.1e-53 211.1 179 60.9
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 9.3e-53 210.7 178 61.2
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 2.1e-52 209.5 153 65.4
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 2.7e-52 209.1 180 62.2
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 4.6e-52 208.4 179 59.2
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.6e-52 208.4 179 59.2
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 4.6e-52 208.4 179 61.5
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.3e-51 206.8 179 59.2
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.8e-51 206.5 180 61.1
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 2.3e-51 206.1 182 61.0
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 8.7e-51 204.1 174 60.3
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 8.7e-51 204.1 184 57.6
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 8.7e-51 204.1 174 61.5
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.1e-50 203.8 179 58.7
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 5.7e-50 201.4 176 59.1
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 5.7e-50 201.4 176 59.1
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 5.7e-50 201.4 179 59.8
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 5.7e-50 201.4 177 59.9
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 7.4e-50 201.1 174 60.3
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.3e-49 200.3 173 59.0
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 2.8e-49 199.1 174 58.0
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 3.7e-49 198.7 174 59.8
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 6.3e-49 198.0 146 69.9
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.1e-48 197.2 179 58.1
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.1e-48 197.2 171 59.6
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 1.4e-48 196.8 185 59.5
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.4e-48 196.8 177 61.0
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.8e-48 196.4 185 57.3
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.4e-48 196.1 171 57.3
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 3.1e-48 195.7 172 57.0
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 4.1e-48 195.3 174 62.1
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 4.1e-48 195.3 176 58.0
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 1.2e-47 193.7 180 58.9
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 2.6e-47 192.6 182 56.6
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 3.4e-47 192.2 180 56.7
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 7.7e-47 191.0 151 63.6
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 1.3e-46 190.3 244 44.7
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 8.5e-46 187.6 181 55.8
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 8.5e-46 187.6 179 55.9
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 1.4e-45 186.8 179 56.4
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.4e-45 186.8 184 56.5
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.4e-45 186.8 143 69.9
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.9e-45 186.4 175 57.7
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.9e-45 186.4 188 55.9
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.6e-44 183.3 100 89.0
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.1e-44 183.0 174 56.3
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 2.1e-44 183.0 160 60.0
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 2.7e-44 182.6 180 56.7
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 3.6e-44 182.2 179 57.5
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 4.6e-44 181.8 174 54.6
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 6.1e-44 181.4 150 61.3
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 6.1e-44 181.4 180 56.7
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 7.9e-44 181.0 211 51.2
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.0e-43 180.6 176 55.1
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.4e-43 180.3 145 60.7
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.4e-43 180.3 154 60.4
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 2.3e-43 179.5 147 61.9
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 3.0e-43 179.1 235 49.4
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 1.1e-42 177.2 281 39.1
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 1.1e-42 177.2 121 72.7
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.1e-42 177.2 151 57.0
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 1.5e-42 176.8 152 56.6
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 1.5e-42 176.8 155 56.8
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 1.5e-42 176.8 152 56.6
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.5e-42 176.8 181 51.9
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 1.5e-42 176.8 138 63.8
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 5.7e-42 174.9 152 55.9
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 5.7e-42 174.9 169 52.1
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 5.7e-42 174.9 184 53.3
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 1.3e-41 173.7 151 58.3
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 1.3e-41 173.7 152 55.9
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 1.3e-41 173.7 143 58.0
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 1.3e-41 173.7 143 58.0
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 2.2e-41 172.9 180 48.9
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 2.2e-41 172.9 174 56.9
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 2.8e-41 172.6 178 50.6
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 4.8e-41 171.8 179 49.7
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 4.8e-41 171.8 184 52.2
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 4.8e-41 171.8 179 52.0
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 6.3e-41 171.4 120 66.7
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 8.2e-41 171.0 178 50.0
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.4e-40 170.2 178 49.4
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 1.4e-40 170.2 147 61.2
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 2.4e-40 169.5 175 54.3
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 9.1e-40 167.5 133 65.4
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 2.0e-39 166.4 144 55.6
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 1.7e-38 163.3 157 59.2
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 5.0e-38 161.8 175 49.1
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 6.5e-38 161.4 179 53.6
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 1.4e-37 160.2 122 64.8
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 3.2e-37 159.1 138 58.0
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 6.7e-35 151.4 138 55.8
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 8.8e-35 151.0 146 55.5
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 2.6e-31 139.4 149 53.0
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 3.5e-31 139.0 250 37.2
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 5.0e-30 135.2 181 45.3
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.5e-29 133.7 115 61.7
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 4.2e-29 132.1 124 50.0
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 7.2e-29 131.3 147 49.0
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 7.2e-29 131.3 147 49.0
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 2.1e-28 129.8 117 51.3
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 3.0e-27 125.9 137 48.2
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 3.9e-27 125.6 184 40.8
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.5e-26 123.6 161 43.5
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 7.4e-26 121.3 141 46.8
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 1.3e-25 120.6 128 53.1
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 1.3e-25 120.6 128 53.1
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.4e-24 116.3 148 49.3
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 3.5e-23 112.5 180 38.9
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 4.0e-19 99.0 89 60.7
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 1.3e-17 94.0 103 47.6
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 2.8e-17 92.8 115 47.0
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 3.5e-15 85.9 168 35.1
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 1.3e-09 67.4 88 42.0
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 2.8e-09 66.2 88 42.0
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 1.4e-08 63.9 48 64.6
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 2.4e-08 63.2 88 40.9
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 2.4e-08 63.2 88 40.9
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 5.4e-08 62.0 88 39.8
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 2.7e-07 59.7 84 40.5
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 2.7e-07 59.7 84 40.5
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 4.5e-07 58.9 36 75.0
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 1.3e-06 57.4 42 66.7


User provided reference genes

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