Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.0e-47 193.0 89 100.0
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.4e-11 71.6 40 77.5
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.4e-11 71.6 40 77.5
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 2.2e-10 68.9 40 72.5
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 2.2e-10 68.9 50 62.0
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 2.2e-10 68.9 40 72.5
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 2.8e-10 68.6 40 72.5
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 2.8e-10 68.6 40 72.5
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 3.7e-10 68.2 40 70.0
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 3.7e-10 68.2 40 70.0
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 3.7e-10 68.2 40 72.5
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 3.7e-10 68.2 40 72.5
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 4.9e-10 67.8 40 70.0
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 4.9e-10 67.8 40 70.0
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 4.9e-10 67.8 90 41.1
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 4.9e-10 67.8 40 72.5
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 4.9e-10 67.8 40 72.5
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 6.3e-10 67.4 40 70.0
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 8.3e-10 67.0 40 72.5
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 8.3e-10 67.0 40 72.5
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 8.3e-10 67.0 40 72.5
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 8.3e-10 67.0 40 70.0
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 8.3e-10 67.0 40 70.0
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.1e-09 66.6 40 67.5
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.1e-09 66.6 40 67.5
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.4e-09 66.2 40 70.0
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 1.4e-09 66.2 40 70.0
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 1.4e-09 66.2 40 72.5
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.8e-09 65.9 40 67.5
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.8e-09 65.9 40 70.0
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.8e-09 65.9 40 70.0
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.8e-09 65.9 40 72.5
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 1.8e-09 65.9 40 70.0
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.4e-09 65.5 40 67.5
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 2.4e-09 65.5 40 70.0
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.4e-09 65.5 40 67.5
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 3.1e-09 65.1 40 70.0
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 3.1e-09 65.1 40 67.5
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 3.1e-09 65.1 40 70.0
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.1e-09 65.1 40 70.0
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.1e-09 65.1 40 70.0
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.1e-09 65.1 40 70.0
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.1e-09 65.1 40 70.0
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 3.1e-09 65.1 40 70.0
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 3.1e-09 65.1 40 70.0
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.1e-09 64.7 40 67.5
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.1e-09 64.7 40 67.5
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.1e-09 64.7 40 67.5
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 4.1e-09 64.7 40 67.5
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 4.1e-09 64.7 40 67.5
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.1e-09 64.7 40 70.0
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 4.1e-09 64.7 40 67.5
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 4.1e-09 64.7 40 67.5
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 4.1e-09 64.7 40 67.5
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 4.1e-09 64.7 40 67.5
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 5.4e-09 64.3 40 65.0
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 5.4e-09 64.3 39 69.2
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 7.0e-09 63.9 40 67.5
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 9.2e-09 63.5 52 55.8
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 9.2e-09 63.5 40 65.0
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 9.2e-09 63.5 40 65.0
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.2e-08 63.2 40 67.5
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.2e-08 63.2 40 67.5
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.6e-08 62.8 40 65.0
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.6e-08 62.8 39 66.7
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.6e-08 62.8 39 66.7
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.6e-08 62.8 39 66.7
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.0e-08 62.4 40 67.5
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 2.0e-08 62.4 40 65.0
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 3.5e-08 61.6 40 67.5
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 4.5e-08 61.2 40 62.5
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 4.5e-08 61.2 40 65.0
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 4.5e-08 61.2 40 65.0
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 5.9e-08 60.8 40 65.0
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 5.9e-08 60.8 40 65.0
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 5.9e-08 60.8 40 65.0
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 5.9e-08 60.8 40 65.0
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 5.9e-08 60.8 40 65.0
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 5.9e-08 60.8 40 65.0
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 5.9e-08 60.8 40 65.0
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 5.9e-08 60.8 40 65.0
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 5.9e-08 60.8 40 65.0
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 5.9e-08 60.8 40 65.0
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 5.9e-08 60.8 40 65.0
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 7.8e-08 60.5 40 62.5
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 7.8e-08 60.5 40 62.5
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 7.8e-08 60.5 39 66.7
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 7.8e-08 60.5 40 62.5
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.0e-07 60.1 40 62.5
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.0e-07 60.1 40 65.0
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.3e-07 59.7 40 65.0
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 1.3e-07 59.7 40 65.0
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.3e-07 59.7 40 65.0
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.3e-07 59.7 40 62.5
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.3e-07 59.7 40 65.0
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 1.3e-07 59.7 40 65.0
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 1.3e-07 59.7 40 62.5
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.3e-07 59.7 40 62.5
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 1.7e-07 59.3 40 62.5
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.7e-07 59.3 38 65.8
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.7e-07 59.3 40 62.5
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 2.3e-07 58.9 40 60.0
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 2.3e-07 58.9 40 65.0
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 2.9e-07 58.5 40 65.0
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 3.9e-07 58.2 40 60.0
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 5.0e-07 57.8 40 62.5
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 5.0e-07 57.8 40 62.5
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 6.6e-07 57.4 40 62.5
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 6.6e-07 57.4 40 60.0
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 6.6e-07 57.4 40 62.5
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 8.6e-07 57.0 40 62.5
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.9e-06 55.8 40 60.0
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.9e-06 55.8 40 60.0
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 2.5e-06 55.5 41 61.0
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 2.5e-06 55.5 40 60.0
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 2.5e-06 55.5 40 60.0
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 4.3e-06 54.7 40 62.5
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.6e-06 54.3 40 57.5


User provided reference genes

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