Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 4.1e-103 378.3 217 100.0
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 5.8e-81 304.7 219 80.4
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 8.4e-56 221.1 214 59.3
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 2.7e-46 189.5 205 61.0
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 1.3e-40 170.6 234 46.2
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 1.9e-39 166.8 200 56.5
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 5.1e-37 158.7 196 55.1
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 2.6e-33 146.4 220 49.5
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 2.8e-27 126.3 210 39.0
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.6e-25 119.8 254 35.0
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 2.9e-24 116.3 233 36.5
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 8.5e-24 114.8 237 36.3
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 1.9e-23 113.6 237 35.9
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.9e-23 113.6 162 40.7
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 7.2e-23 111.7 220 37.7
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 9.3e-23 111.3 152 44.7
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.2e-22 110.9 249 34.1
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.1e-22 110.2 222 36.5
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 7.9e-22 108.2 136 45.6
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.0e-21 107.8 123 46.3
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 1.3e-21 107.5 158 42.4
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.8e-21 107.1 146 44.5
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 2.3e-21 106.7 201 38.3
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 2.3e-21 106.7 234 32.9
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 3.9e-21 105.9 181 43.1
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 3.9e-21 105.9 120 48.3
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.1e-20 104.4 122 47.5
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 1.1e-20 104.4 136 44.9
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.5e-20 104.0 122 47.5
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.5e-20 104.0 122 46.7
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.5e-20 104.0 134 44.0
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 3.3e-20 102.8 147 47.6
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 4.3e-20 102.4 218 35.8
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.7e-20 102.1 222 35.6
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.7e-20 101.3 235 33.6
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.3e-19 100.9 125 45.6
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.2e-19 100.1 122 45.9
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 2.8e-19 99.8 164 37.8
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 3.7e-19 99.4 53 86.8
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 6.3e-19 98.6 125 44.8
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.3e-19 98.6 140 41.4
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 6.3e-19 98.6 153 40.5
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.1e-18 97.8 97 55.7
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.1e-18 97.8 127 44.1
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 1.1e-18 97.8 116 47.4
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.8e-18 97.1 156 42.9
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.8e-18 97.1 134 41.8
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 1.8e-18 97.1 125 47.2
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 2.4e-18 96.7 156 42.3
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 2.4e-18 96.7 82 57.3
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 3.1e-18 96.3 193 36.8
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 5.3e-18 95.5 121 47.1
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 6.9e-18 95.1 134 41.8
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 6.9e-18 95.1 118 46.6
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 9.1e-18 94.7 174 39.1
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 9.1e-18 94.7 145 42.1
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 9.1e-18 94.7 174 39.1
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 9.1e-18 94.7 154 39.0
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.2e-17 94.4 153 41.2
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.5e-17 94.0 210 36.7
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.0e-17 93.6 153 39.2
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 2.6e-17 93.2 122 45.9
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 4.5e-17 92.4 119 44.5
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 5.9e-17 92.0 165 38.2
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 5.9e-17 92.0 163 38.7
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 5.9e-17 92.0 87 57.5
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 5.9e-17 92.0 134 42.5
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 7.7e-17 91.7 78 55.1
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 7.7e-17 91.7 130 41.5
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 7.7e-17 91.7 122 45.1
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.0e-16 91.3 166 38.6
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.0e-16 91.3 166 38.6
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 1.3e-16 90.9 132 44.7
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.3e-16 90.9 165 35.2
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.7e-16 90.5 133 41.4
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.7e-16 90.5 122 45.1
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 2.2e-16 90.1 151 41.1
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.9e-16 89.7 152 37.5
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.9e-16 89.7 121 40.5
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 2.9e-16 89.7 99 47.5
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 2.9e-16 89.7 103 44.7
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 5.0e-16 89.0 75 60.0
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 6.5e-16 88.6 138 36.2
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 6.5e-16 88.6 138 39.9
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.5e-16 88.2 88 53.4
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.1e-15 87.8 126 46.0
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.4e-15 87.4 95 51.6
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 2.5e-15 86.7 142 44.4
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.5e-15 86.7 102 48.0
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.5e-15 86.7 103 44.7
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 3.2e-15 86.3 93 49.5
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.2e-15 86.3 103 51.5
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.2e-15 85.9 88 51.1
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.2e-15 85.9 88 52.3
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 5.5e-15 85.5 175 37.7
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 7.2e-15 85.1 64 60.9
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 7.2e-15 85.1 71 60.6
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 7.2e-15 85.1 71 60.6
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.6e-14 84.0 75 49.3
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.6e-14 84.0 129 44.2
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.6e-14 84.0 158 37.3
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 2.1e-14 83.6 78 52.6
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 2.7e-14 83.2 165 37.6
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.7e-14 83.2 158 37.3
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.0e-13 81.3 83 48.2
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 1.4e-13 80.9 173 37.0
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.8e-13 80.5 83 48.2
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.3e-13 80.1 83 48.2
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 3.9e-13 79.3 83 47.0
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 3.9e-13 79.3 164 34.8
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.1e-13 79.0 150 39.3
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.1e-12 77.8 102 45.1
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-12 77.8 83 45.8
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 1.1e-12 77.8 177 33.3
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 3.3e-12 76.3 88 47.7
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 3.3e-12 76.3 121 37.2
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 7.4e-12 75.1 98 45.9
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 7.4e-12 75.1 78 50.0
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 1.3e-11 74.3 103 43.7
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 2.2e-11 73.6 143 35.7
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.8e-11 73.2 107 43.0
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.8e-11 73.2 107 43.0
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 8.2e-11 71.6 135 35.6
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.1e-10 71.2 78 48.7
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 1.4e-10 70.9 43 72.1
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 2.4e-10 70.1 97 43.3
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 5.3e-10 68.9 159 40.3
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 6.9e-10 68.6 118 39.8
Nitab4.5_0000425g0070 Nicotiana tabacum HOM05D004520 ORTHO05D005520 6.9e-10 68.6 54 70.4
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 9.1e-10 68.2 61 55.7
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 9.1e-10 68.2 122 36.1
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 3.4e-09 66.2 138 34.1
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 4.5e-09 65.9 133 35.3
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 5.9e-09 65.5 86 44.2
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 5.9e-09 65.5 114 38.6
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 7.7e-09 65.1 72 44.4
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 7.7e-09 65.1 117 35.9
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 1.0e-08 64.7 98 35.7
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 2.2e-08 63.5 85 44.7
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 2.2e-08 63.5 85 44.7
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 3.8e-08 62.8 163 33.1
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 6.5e-08 62.0 104 40.4
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 3.2e-07 59.7 119 31.1
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 3.2e-07 59.7 119 31.9
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 5.5e-07 58.9 100 38.0
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 5.5e-07 58.9 100 38.0
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 5.5e-07 58.9 118 37.3
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 5.5e-07 58.9 197 31.0
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 7.2e-07 58.5 89 42.7
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 2.1e-06 57.0 97 36.1
Ciclev10003675m.g Citrus clementina HOM05D004520 ORTHO05D005520 2.7e-06 56.6 138 31.9
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 2.7e-06 56.6 50 56.0
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 6.1e-06 55.5 107 35.5


User provided reference genes

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