Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 4.9e-168 594.7 383 100.0
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.8e-133 479.9 385 86.2
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 8.5e-104 381.3 332 64.2
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 4.2e-103 379.0 332 63.9
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 2.8e-99 366.3 332 80.7
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 5.7e-92 342.0 346 57.8
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 1.3e-75 287.7 332 64.2
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 3.2e-74 283.1 335 53.4
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 3.5e-73 279.6 333 59.5
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.3e-72 277.7 331 55.9
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 1.3e-72 277.7 347 54.2
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.7e-72 277.3 332 50.9
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 3.0e-72 276.6 333 64.3
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 3.0e-72 276.6 336 61.3
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 6.6e-72 275.4 331 55.6
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 6.6e-72 275.4 337 60.8
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 8.6e-72 275.0 332 57.8
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.1e-71 274.6 336 57.7
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 3.3e-71 273.1 332 68.1
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 3.3e-71 273.1 336 67.9
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 7.3e-71 271.9 338 53.8
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.2e-70 271.2 334 48.8
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 2.8e-70 270.0 332 50.3
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 4.7e-70 269.2 377 46.7
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 4.7e-70 269.2 335 53.7
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 1.1e-69 268.1 335 51.3
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 1.4e-69 267.7 335 50.7
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.8e-69 267.3 332 67.2
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.3e-69 266.9 336 68.2
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 3.1e-69 266.5 333 53.2
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 3.1e-69 266.5 386 48.2
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 5.2e-69 265.8 332 54.8
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.2e-69 265.8 337 61.4
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.2e-68 264.6 333 48.6
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.0e-68 263.8 339 54.9
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 2.6e-68 263.5 322 70.8
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 5.8e-68 262.3 332 53.6
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 9.9e-68 261.5 336 51.5
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.2e-67 260.4 305 51.1
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 2.9e-67 260.0 334 52.7
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 3.7e-67 259.6 332 49.1
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 4.9e-67 259.2 346 48.0
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 6.4e-67 258.8 333 49.8
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 1.9e-66 257.3 334 46.7
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 5.4e-66 255.8 331 47.7
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 7.1e-66 255.4 336 52.1
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.6e-65 254.2 331 46.8
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 2.7e-65 253.4 368 44.8
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 4.6e-65 252.7 331 46.8
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 4.6e-65 252.7 328 65.9
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 6.0e-65 252.3 332 50.0
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 6.0e-65 252.3 331 51.1
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 1.0e-64 251.5 337 52.2
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 3.9e-64 249.6 322 50.0
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 6.6e-64 248.8 334 50.9
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 8.6e-64 248.4 331 45.6
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.5e-63 247.7 331 59.5
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 4.3e-63 246.1 334 46.7
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 5.6e-63 245.7 334 51.8
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 9.6e-63 245.0 332 59.6
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 9.6e-63 245.0 332 59.6
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.6e-62 244.2 311 49.2
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.1e-61 241.5 336 45.8
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.4e-61 241.1 300 49.3
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 5.2e-61 239.2 342 63.2
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 8.9e-61 238.4 344 62.8
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 1.2e-60 238.0 336 49.4
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 1.2e-60 238.0 326 47.2
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.5e-60 237.7 326 57.4
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 1.5e-60 237.7 225 68.0
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 2.6e-60 236.9 332 44.0
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 4.4e-60 236.1 335 46.0
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.3e-59 234.6 335 46.0
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 2.9e-59 233.4 348 54.0
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 2.9e-59 233.4 348 54.0
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 6.4e-59 232.3 332 54.5
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 8.4e-59 231.9 356 43.0
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 2.4e-58 230.3 277 56.0
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 3.2e-58 229.9 333 46.2
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 4.2e-58 229.6 331 44.4
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 4.2e-58 229.6 339 54.6
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.7e-57 226.9 322 43.2
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 4.6e-57 226.1 336 51.2
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 4.6e-57 226.1 336 51.2
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 7.8e-57 225.3 346 54.6
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.0e-56 224.9 351 49.0
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 3.3e-55 219.9 333 49.8
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 3.3e-55 219.9 334 62.9
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.6e-54 217.6 317 46.7
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 2.1e-54 217.2 333 43.5
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 6.2e-54 215.7 333 56.8
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 8.1e-54 215.3 337 43.9
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.5e-52 211.1 334 60.2
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.0e-52 210.7 325 57.8
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 7.6e-52 208.8 362 40.3
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 9.9e-52 208.4 369 42.8
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.3e-51 208.0 200 64.0
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 4.9e-51 206.1 334 41.9
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 6.4e-51 205.7 333 55.6
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 3.5e-49 199.9 319 41.7
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 3.9e-48 196.4 315 56.8
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 8.7e-48 195.3 345 38.3
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.9e-47 194.1 303 57.4
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 3.3e-47 193.4 303 45.2
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 7.4e-47 192.2 340 46.5
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.1e-46 190.7 189 53.4
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 5.3e-45 186.0 325 41.5
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 5.8e-44 182.6 303 48.2
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 8.4e-43 178.7 159 74.2
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.9e-35 152.9 105 67.6
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 7.1e-34 149.1 181 48.1
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.0e-33 146.0 189 47.1
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.8e-29 134.4 108 65.7
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.5e-28 129.8 186 40.9
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.1e-26 125.2 80 72.5
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.2e-25 121.7 179 45.8
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 3.9e-24 116.7 244 34.8
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 3.9e-24 116.7 121 50.4
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.0e-19 102.1 137 44.5
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.0e-15 87.8 48 83.3
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 5.7e-15 86.3 136 48.5
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 2.8e-14 84.0 44 90.9
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 8.5e-11 72.4 46 69.6
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 8.5e-11 72.4 44 72.7
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 8.5e-11 72.4 68 61.8
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 4.2e-10 70.1 44 70.5
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 5.5e-10 69.7 59 66.1
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 1.6e-09 68.2 43 69.8
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 1.6e-09 68.2 43 69.8
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.0e-08 63.9 75 49.3
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.0e-07 61.2 29 93.1
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.3e-06 58.5 29 86.2
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 4.8e-06 56.6 114 30.7


User provided reference genes

Program Settings