Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 2380.9 1205 100.0
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 2278.1 1218 95.4
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 2207.9 1203 92.5
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 2207.9 1203 92.7
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 2206.0 1203 92.7
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 2186.4 1203 92.4
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1922.9 1219 80.8
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1890.9 1219 79.3
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1889.4 1222 79.5
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1864.0 1218 78.7
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1850.1 1221 77.3
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1843.9 1222 77.1
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1842.8 1219 76.9
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1840.9 1218 76.4
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1825.8 1221 76.5
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1822.4 1217 76.0
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1819.3 1217 76.2
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1819.3 1221 76.2
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1813.9 1304 73.3
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1812.7 1219 77.4
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1807.0 1218 75.2
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1803.1 1305 73.2
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1803.1 1305 73.2
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1799.3 1215 75.8
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1795.4 1222 75.0
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1793.9 1218 75.3
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1790.8 1218 75.3
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1790.8 1222 75.0
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1787.3 1221 74.8
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1780.8 1312 70.9
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1780.4 1214 75.0
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1779.2 1219 74.4
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1776.5 1216 74.6
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1776.1 1218 74.5
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1774.6 1219 74.5
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1771.9 1210 74.7
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1771.1 1218 74.6
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1768.4 1217 74.2
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1765.4 1220 74.3
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1765.0 1222 73.7
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1764.6 1218 74.5
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1763.0 1220 74.3
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1761.1 1215 73.5
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1760.3 1222 73.9
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1758.4 1205 73.8
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1758.0 1222 73.6
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1756.1 1214 74.5
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1755.7 1217 74.2
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1753.4 1222 73.5
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1752.3 1220 73.8
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1746.5 1213 73.7
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1745.7 1220 73.3
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1745.3 1213 73.8
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1743.0 1213 73.8
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1742.6 1213 73.8
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1742.6 1221 74.4
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1741.5 1213 73.7
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1740.7 1220 73.7
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1739.9 1227 72.6
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1739.5 1213 73.5
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1734.9 1216 73.6
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1730.3 1362 69.1
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1727.2 1213 73.0
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1726.8 1215 73.4
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1726.5 1213 72.5
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1725.7 1212 73.0
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1723.0 1220 72.8
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1720.7 1212 72.7
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1720.3 1212 72.7
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1717.2 1213 72.1
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1716.0 1216 72.9
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1715.3 1147 76.8
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1711.0 1215 72.4
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1711.0 1213 72.5
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1709.5 1215 72.3
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1705.6 1213 72.5
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1698.3 1201 72.4
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1676.8 1219 70.5
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1670.2 1207 72.4
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1667.9 1225 69.6
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1666.0 1115 77.2
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1662.1 1217 70.3
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1656.7 1204 71.8
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1625.9 1218 70.0
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1594.3 1231 67.7
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1575.1 1214 67.9
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1549.6 1209 65.8
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1514.2 1214 64.4
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1513.8 1057 74.0
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1505.7 1065 72.4
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1500.7 1061 72.2
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1498.4 1030 75.0
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1484.9 1227 63.0
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1448.3 1041 72.6
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1416.7 996 72.9
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1411.4 1007 72.5
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1408.3 1001 72.4
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1387.9 1069 66.6
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1366.7 915 77.5
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1296.6 845 77.5
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1294.6 948 70.8
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1269.2 1234 54.4
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1253.8 889 71.0
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1177.2 1246 51.7
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1103.6 921 63.0
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1077.4 1228 48.9
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 4.2e-306 1055.0 1227 48.1
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.3e-270 937.2 1204 44.0
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 5.5e-266 921.8 1346 40.8
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.1e-250 870.9 518 85.5
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.9e-242 843.6 1239 40.4
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.8e-225 786.6 1150 40.5
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 1.3e-187 661.4 442 77.6
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.7e-145 521.5 501 59.5
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.7e-145 520.4 756 42.9
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 9.1e-144 515.8 306 81.4
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 2.0e-143 514.6 429 63.6
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 2.8e-140 504.2 324 76.9
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.2e-128 464.2 323 70.0
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 3.5e-127 460.7 347 68.6
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.0e-118 432.6 292 76.4
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 1.4e-107 395.6 346 64.7
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 3.8e-105 387.5 309 64.4
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.0e-94 351.3 379 50.9
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 8.7e-86 323.2 256 66.0
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.1e-85 322.8 289 54.3
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 3.8e-81 307.8 384 48.7
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 3.0e-62 245.0 161 73.3
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 2.5e-61 241.9 262 51.9
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 2.1e-47 195.7 116 77.6
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 2.1e-47 195.7 124 77.4
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 1.8e-46 192.6 115 77.4
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 6.3e-44 184.1 163 56.4
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.4e-43 182.2 138 60.9
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 5.3e-43 181.0 146 66.4
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 1.7e-41 176.0 732 25.7
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 8.8e-38 163.7 256 40.2
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.0e-37 162.5 192 49.0
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 9.1e-35 153.7 162 53.1
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.4e-30 139.8 81 81.5
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.7e-26 125.6 163 43.6
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.8e-19 102.8 73 64.4
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 2.5e-16 92.4 59 72.9
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 4.7e-15 88.2 62 69.4
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.0e-14 85.5 233 31.8
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 7.5e-13 80.9 47 74.5
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.2e-11 73.9 48 64.6
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 6.0e-10 71.2 74 63.5
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 6.0e-10 71.2 74 63.5
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 7.8e-10 70.9 60 70.0
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 7.8e-10 70.9 55 63.6
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 7.8e-10 70.9 70 57.1
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 5.6e-08 64.7 38 76.3
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.1e-06 60.5 77 48.1
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 5.2e-06 58.2 45 71.1


User provided reference genes

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