Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 2508.4 1321 100.0
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 2347.4 1314 94.9
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1991.5 1287 83.4
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1980.7 1287 79.8
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1726.1 1133 82.8
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1488.0 1322 61.8
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1427.5 1320 59.8
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 0.0e+00 1411.4 923 81.9
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1402.5 1314 59.8
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1397.9 1303 58.6
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1382.9 1321 58.7
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1381.7 1305 58.6
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1377.8 1321 58.4
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1375.9 1320 57.3
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1375.1 1334 57.1
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1374.8 1336 57.6
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1365.9 1313 58.3
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1363.2 1317 59.5
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1360.9 1308 57.3
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1352.8 1303 57.9
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1349.7 1315 58.2
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1342.0 1356 57.2
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1340.5 1317 58.2
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1330.9 1315 57.9
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1327.8 1312 56.5
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1320.1 1318 57.5
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1316.2 1317 56.3
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1314.7 1300 57.0
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1313.9 1306 56.0
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1311.2 1325 55.5
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1310.8 1325 55.5
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1310.0 1324 55.3
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1307.7 1328 55.3
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1301.6 1315 56.0
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1300.4 1317 55.7
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1298.5 1308 56.4
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1296.6 1307 55.2
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1296.6 1283 58.7
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1294.3 1319 55.5
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1292.3 1306 56.0
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1286.6 1319 56.8
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1280.8 1332 55.4
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1280.8 1332 55.0
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1276.9 1338 55.0
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1271.1 1314 55.0
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1264.2 1310 54.8
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1253.4 1328 54.4
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1250.0 1329 54.3
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1248.8 1397 52.2
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1247.3 1311 54.8
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1246.9 1322 55.7
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1243.8 1326 54.0
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1242.6 1328 52.8
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1241.1 1313 54.5
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1238.0 1324 53.9
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1237.2 1327 54.8
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1234.9 1280 55.7
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1233.0 1326 54.1
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1229.9 1323 52.9
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1223.0 1315 55.0
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1214.9 1312 52.6
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1208.0 1195 56.7
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1207.6 1309 52.8
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1201.4 1334 52.6
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1200.7 1294 54.0
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1196.4 1337 52.6
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1185.2 1084 60.1
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1169.8 1113 58.4
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1168.7 1328 52.0
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1157.9 1303 52.2
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1137.5 1289 52.1
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1134.0 1331 51.1
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1130.9 1313 50.6
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1130.5 1302 51.8
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1123.2 1301 51.5
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1122.8 1304 50.2
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1119.0 1303 51.3
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1105.1 1104 56.1
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1103.2 1115 56.2
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1097.4 1316 50.9
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1092.4 1318 49.8
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1092.0 1289 50.4
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1088.2 1364 47.7
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1083.6 1311 49.4
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1082.8 1312 50.1
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1081.6 1311 49.4
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1078.5 1312 48.8
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1078.2 1319 47.7
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1075.1 1296 49.2
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 9.0e-312 1074.3 1298 49.0
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 4.5e-311 1071.6 1305 48.9
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 3.9e-305 1052.0 1117 54.2
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 4.0e-278 962.2 1338 45.6
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 2.6e-269 932.9 1337 44.1
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 1.2e-258 897.5 1064 50.8
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 6.3e-255 885.2 1163 47.3
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 5.2e-249 865.5 745 62.3
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 1.0e-228 798.1 1015 48.1
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 2.1e-202 710.7 1357 37.0
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 2.3e-201 707.2 1374 36.0
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 2.1e-197 694.1 1328 36.5
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 8.4e-191 672.2 355 92.4
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 1.8e-172 611.3 1388 32.1
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 7.6e-160 569.3 679 51.4
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 5.5e-142 510.0 445 62.7
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 2.8e-138 497.7 670 46.4
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 2.4e-129 468.0 1367 29.7
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 5.9e-128 463.4 593 48.7
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 9.2e-105 386.3 1160 29.1
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 2.0e-104 385.2 755 36.8
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 8.6e-103 379.8 527 46.1
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 6.0e-96 357.1 268 67.5
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 1.3e-82 312.8 340 52.1
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.4e-73 282.0 279 57.0
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 2.6e-67 261.9 774 31.8
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 2.9e-66 258.5 403 41.4
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 6.2e-61 240.7 231 57.1
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 3.8e-58 231.5 1155 24.4
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 2.9e-18 99.0 65 69.2
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 3.2e-17 95.5 102 53.9
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 4.7e-16 91.7 59 67.8
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 8.8e-15 87.4 103 51.5
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 1.5e-14 86.7 54 72.2
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 9.7e-14 84.0 97 50.5
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 1.5e-09 70.1 85 54.1
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 1.9e-09 69.7 49 65.3


User provided reference genes

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