Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.0e-217 760.0 445 100.0
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.5e-184 649.8 512 79.5
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 9.5e-139 497.7 441 70.5
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.6e-130 469.2 446 66.4
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.2e-118 429.5 478 57.9
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 6.6e-116 421.8 478 56.1
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 5.3e-105 385.6 487 58.5
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 4.3e-99 365.9 370 65.1
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 2.0e-80 303.9 482 45.0
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 3.4e-80 303.1 522 46.0
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 8.2e-74 282.0 520 44.0
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 1.2e-69 268.1 443 43.1
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 2.9e-63 246.9 462 45.5
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 1.5e-62 244.6 462 45.2
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 2.5e-62 243.8 448 46.2
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 1.1e-59 235.0 455 45.1
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 4.4e-59 233.0 541 36.2
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 3.7e-58 229.9 516 39.5
CAN.G2071.4 Capsicum annuum HOM05D003229 ORTHO05D003835 2.9e-55 220.3 270 47.4
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 3.0e-52 210.3 503 41.0
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 8.8e-52 208.8 467 40.3
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 4.4e-51 206.5 454 36.3
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 3.1e-49 200.3 286 43.4
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 1.2e-48 198.4 479 37.2
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 1.3e-47 194.9 543 36.8
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 3.8e-47 193.4 420 37.9
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 1.9e-46 191.0 450 42.2
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 2.7e-45 187.2 449 36.7
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 4.7e-45 186.4 261 49.4
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 1.4e-44 184.9 488 36.3
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 1.5e-43 181.4 468 34.2
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 2.8e-42 177.2 298 47.7
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 2.8e-42 177.2 539 37.7
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 4.9e-42 176.4 453 36.4
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 5.4e-41 172.9 290 46.9
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 9.1e-41 172.2 473 33.2
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 9.1e-41 172.2 450 36.7
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.5e-40 169.9 490 37.6
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 1.7e-39 167.9 415 41.4
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 6.6e-39 166.0 587 31.7
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 7.2e-38 162.5 280 45.4
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 1.2e-37 161.8 300 43.3
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 1.2e-37 161.8 472 33.3
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 4.7e-37 159.8 361 42.7
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 8.0e-37 159.1 518 33.2
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.4e-36 158.3 491 36.5
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 1.8e-36 157.9 461 34.7
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 2.3e-36 157.5 491 36.5
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 5.2e-36 156.4 296 41.2
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 2.0e-35 154.5 181 47.0
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 7.5e-35 152.5 289 40.1
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 2.9e-34 150.6 480 34.6
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 4.1e-33 146.7 441 33.6
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 1.2e-32 145.2 507 34.9
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 2.3e-31 141.0 452 34.1
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 5.0e-31 139.8 385 34.3
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 8.6e-31 139.0 513 32.0
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 1.5e-30 138.3 497 33.0
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.9e-30 137.9 497 33.0
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 3.3e-30 137.1 545 31.0
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 7.3e-30 136.0 452 36.9
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 3.6e-29 133.7 542 33.2
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 4.7e-29 133.3 463 30.2
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 6.2e-29 132.9 338 35.2
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 8.0e-29 132.5 450 36.2
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 1.4e-28 131.7 495 31.9
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.8e-28 131.3 281 42.3
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 3.1e-28 130.6 325 40.3
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.2e-28 129.8 504 35.1
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 5.2e-28 129.8 258 40.3
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 5.2e-28 129.8 509 35.0
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 5.2e-28 129.8 345 37.7
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 6.8e-28 129.4 308 40.6
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 2.6e-27 127.5 354 34.7
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 3.7e-26 123.6 338 35.8
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 3.7e-26 123.6 505 31.1
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 4.1e-25 120.2 504 32.1
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 5.4e-25 119.8 361 34.9
MBI05_g37661_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 5.4e-25 119.8 229 39.3
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 7.0e-25 119.4 510 29.8
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 9.2e-25 119.0 521 30.9
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 3.5e-24 117.1 78 64.1
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 3.5e-24 117.1 519 28.1
CAN.G916.7 Capsicum annuum HOM05D003658 ORTHO05D003835 4.6e-24 116.7 130 53.1
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 4.6e-24 116.7 445 32.6
Thhalv10002930m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.3e-23 114.4 217 34.1
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 8.6e-23 112.5 365 29.9
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 8.6e-23 112.5 316 38.3
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 8.6e-23 112.5 450 29.6
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.1e-22 112.1 288 33.3
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.1e-22 112.1 111 61.3
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 1.5e-22 111.7 273 31.5
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 3.3e-22 110.5 347 34.9
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 5.6e-22 109.8 486 28.0
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 7.3e-22 109.4 74 59.5
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 7.3e-22 109.4 415 28.9
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 2.1e-21 107.8 465 30.3
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 3.6e-21 107.1 229 37.6
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 4.7e-21 106.7 75 60.0
Nitab4.5_0002595g0030 Nicotiana tabacum HOM05D003229 ORTHO05D003835 6.2e-21 106.3 79 57.0
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 1.1e-20 105.5 358 28.2
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.4e-20 105.1 93 51.6
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 1.4e-20 105.1 92 52.2
Nitab4.5_0000117g0180 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.4e-20 105.1 79 57.0
Os11g0573200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 2.3e-20 104.4 229 46.7
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 4.0e-20 103.6 228 39.9
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 4.0e-20 103.6 370 29.2
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 5.2e-20 103.2 183 39.9
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 6.8e-20 102.8 466 28.5
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 8.9e-20 102.4 264 30.3
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 8.9e-20 102.4 74 62.2
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.2e-19 102.1 93 50.5
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 3.4e-19 100.5 194 37.6
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 5.8e-19 99.8 285 36.5
AUR62036294 Chenopodium quinoa HOM05D003229 ORTHO05D003835 7.5e-19 99.4 148 37.2
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 9.8e-19 99.0 372 30.4
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 9.8e-19 99.0 467 29.3
Solyc01g056760.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.3e-18 98.6 77 55.8
CAN.G10408.1 Capsicum annuum HOM05D003229 ORTHO05D003835 2.2e-18 97.8 71 63.4
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 2.9e-18 97.4 76 59.2
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 2.9e-18 97.4 243 31.7
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 2.9e-18 97.4 243 31.7
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 4.9e-18 96.7 357 29.7
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 4.9e-18 96.7 357 29.7
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 6.4e-18 96.3 243 31.3
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 6.4e-18 96.3 581 29.1
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 8.3e-18 95.9 269 29.4
AUR62038407 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.4e-17 95.1 148 41.9
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 1.9e-17 94.7 468 28.6
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.9e-17 94.7 95 46.3
Hund15039 Selenicereus undatus HOM05D003229 ORTHO05D003835 3.2e-17 94.0 99 42.4
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 9.2e-17 92.4 95 53.7
Psat5g107520 Pisum sativum HOM05D003229 ORTHO05D003835 9.2e-17 92.4 149 55.7
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 1.2e-16 92.0 244 34.8
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 2.1e-16 91.3 262 29.4
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 2.7e-16 90.9 263 30.8
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 4.6e-16 90.1 91 42.9
Thhalv10023543m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 4.6e-16 90.1 312 34.9
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 6.0e-16 89.7 252 31.0
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 6.0e-16 89.7 213 29.6
Lj2A839T58 Lonicera japonica HOM05D003229 ORTHO05D003835 6.0e-16 89.7 203 37.9
CAN.G1463.24 Capsicum annuum HOM05D003229 ORTHO05D003835 7.8e-16 89.4 117 48.7
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 7.8e-16 89.4 240 31.2
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 2.3e-15 87.8 243 34.6
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 1.1e-14 85.5 235 37.0
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 2.1e-13 81.3 109 37.6
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 2.1e-13 81.3 97 43.3
A03p27320 Brassica napus HOM05D003229 ORTHO05D003835 2.8e-13 80.9 118 36.4
BraA03t11943Z Brassica rapa HOM05D003229 ORTHO05D003835 2.8e-13 80.9 118 36.4
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 3.6e-13 80.5 110 37.3
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 3.6e-13 80.5 110 37.3
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 3.6e-13 80.5 76 44.7
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 4.7e-13 80.1 91 42.9
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 6.2e-13 79.7 68 47.1
CSS0028132 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 6.2e-13 79.7 111 42.3
Oeu047795.1 Olea europaea HOM05D003229 ORTHO05D003835 1.4e-12 78.6 53 56.6
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 2.3e-12 77.8 68 47.1
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 2.3e-12 77.8 68 47.1
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 2.3e-12 77.8 68 47.1
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 2.3e-12 77.8 68 47.1
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 1.5e-11 75.1 418 25.6
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 3.4e-11 73.9 232 34.9
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 9.9e-11 72.4 372 31.7
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 9.9e-11 72.4 454 28.4
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.3e-10 72.0 227 28.6
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 6.4e-10 69.7 95 38.9
AL7G45170 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 8.4e-10 69.3 44 56.8
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 1.4e-09 68.6 151 31.1
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.9e-09 68.2 383 30.5
AT5G36240 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 4.1e-09 67.0 65 61.5
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 7.1e-09 66.2 138 26.8
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 9.2e-09 65.9 235 36.2
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 1.0e-07 62.4 162 34.0
Lj2C419T7 Lonicera japonica HOM05D003229 ORTHO05D003835 1.1e-06 58.9 30 73.3
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.5e-06 58.5 142 26.1
Ah.12g059520 Amaranthus hybridus HOM05D003229 ORTHO05D003835 1.9e-06 58.2 70 38.6
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 2.5e-06 57.8 232 36.2
Haze_22516 Corylus avellana HOM05D003229 ORTHO05D017800 2.5e-06 57.8 54 50.0
Ca_10757_v3 Cicer arietinum L. HOM05D000368 ORTHO05D009348 3.3e-06 57.4 93 30.1
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 4.3e-06 57.0 197 29.9
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 4.3e-06 57.0 89 37.1


User provided reference genes

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