Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.8e-235 818.1 399 100.0
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 5.2e-213 744.2 444 85.6
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.9e-211 738.4 436 85.8
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 2.7e-193 678.7 444 78.2
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 7.8e-193 677.2 444 77.7
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 3.9e-192 674.9 444 77.0
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 1.1e-189 666.8 422 80.6
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 5.0e-147 525.0 435 62.5
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 3.0e-144 515.8 395 65.1
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 5.2e-144 515.0 395 65.1
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 9.7e-143 510.8 384 64.8
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 3.1e-141 505.8 440 58.4
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 7.0e-141 504.6 459 58.2
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 2.0e-140 503.1 380 64.2
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 5.9e-140 501.5 399 64.2
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.0e-139 500.7 451 58.5
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 6.5e-139 498.0 455 58.2
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.9e-138 496.5 380 64.2
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 3.2e-138 495.7 379 64.1
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 7.2e-138 494.6 450 58.0
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 4.7e-137 491.9 446 57.0
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 8.0e-137 491.1 419 59.7
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 5.2e-136 488.4 454 57.5
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 6.8e-136 488.0 378 63.2
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 8.8e-136 487.6 405 61.2
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 1.2e-135 487.3 410 60.5
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 1.5e-135 486.9 379 63.3
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 1.5e-135 486.9 427 59.5
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 1.5e-135 486.9 380 64.2
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 2.0e-135 486.5 418 60.3
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 2.6e-135 486.1 426 59.2
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 2.6e-135 486.1 409 59.7
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 9.8e-135 484.2 418 59.6
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 9.8e-135 484.2 402 61.2
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 2.2e-134 483.0 430 57.2
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 2.2e-134 483.0 448 55.4
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 3.7e-134 482.3 383 62.4
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 8.3e-134 481.1 408 59.8
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 1.4e-133 480.3 430 57.4
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 1.8e-133 479.9 395 61.3
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.1e-133 479.2 427 57.8
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 3.1e-133 479.2 444 57.0
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 4.1e-133 478.8 396 61.1
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 7.0e-133 478.0 326 69.9
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 9.1e-133 477.6 424 59.2
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 2.0e-132 476.5 381 62.2
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 2.0e-132 476.5 319 70.8
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 2.0e-132 476.5 424 59.0
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 2.7e-132 476.1 323 69.7
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 4.5e-132 475.3 429 58.7
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 7.7e-132 474.6 381 61.9
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 7.7e-132 474.6 463 55.5
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 7.7e-132 474.6 445 56.2
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.0e-131 474.2 427 58.8
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 1.3e-131 473.8 431 56.8
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 2.2e-131 473.0 449 56.3
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 2.2e-131 473.0 394 61.2
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 2.9e-131 472.6 430 56.7
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 5.0e-131 471.9 386 61.1
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 8.5e-131 471.1 455 54.3
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 8.5e-131 471.1 435 56.8
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.1e-130 470.7 381 61.2
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.1e-130 470.7 450 56.2
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.5e-130 470.3 443 56.0
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.5e-130 470.3 326 69.3
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 1.9e-130 469.9 425 57.4
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 3.2e-130 469.2 444 55.9
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 5.5e-130 468.4 381 61.7
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 7.2e-130 468.0 382 61.3
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 9.4e-130 467.6 380 60.8
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 3.6e-129 465.7 462 55.6
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 8.0e-129 464.5 398 58.0
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 1.4e-128 463.8 326 68.7
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 5.2e-128 461.8 393 59.3
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 1.2e-127 460.7 412 57.5
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 1.5e-127 460.3 326 67.8
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.0e-127 459.9 458 55.0
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 1.2e-124 450.7 450 52.4
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 4.5e-124 448.7 450 52.7
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 7.7e-124 448.0 323 65.0
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.0e-123 447.6 403 57.3
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.3e-123 446.4 323 65.6
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 5.0e-123 445.3 471 52.9
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 4.2e-122 442.2 499 49.9
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 7.2e-122 441.4 432 54.2
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 4.7e-121 438.7 323 63.5
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.3e-120 436.4 317 65.3
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 3.0e-120 436.0 396 57.8
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 6.8e-120 434.9 282 73.0
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.6e-116 423.7 370 58.9
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 3.5e-116 422.5 471 52.0
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 7.8e-116 421.4 346 60.7
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 1.6e-113 413.7 406 54.2
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 2.1e-113 413.3 417 54.2
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 2.1e-113 413.3 417 54.4
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 3.6e-113 412.5 417 54.7
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 2.7e-108 396.4 390 55.1
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 1.3e-107 394.0 443 49.9
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 3.0e-107 392.9 209 88.5
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 2.5e-106 389.8 373 54.4
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.8e-105 386.3 366 55.2
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 3.5e-100 369.4 328 55.5
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 2.9e-94 349.7 441 48.3
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 1.4e-88 330.9 209 73.7
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 2.6e-87 326.6 377 49.1
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 3.1e-80 303.1 417 44.4
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 2.4e-77 293.5 256 60.5
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 5.4e-77 292.4 328 45.1
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 4.6e-76 289.3 170 80.0
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 1.7e-75 287.3 333 47.7
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 4.8e-73 279.3 327 45.0
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 8.1e-73 278.5 175 76.0
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.4e-72 277.7 278 54.3
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 1.6e-68 264.2 279 47.0
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 1.8e-67 260.8 227 63.4
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 5.7e-58 229.2 283 47.7
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 9.0e-56 221.9 268 45.5
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 6.7e-51 205.7 292 41.8
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 2.9e-46 190.3 231 48.5
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 3.1e-40 170.2 207 48.3
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 1.5e-39 167.9 95 78.9
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 4.5e-39 166.4 217 43.8
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.2e-37 160.2 218 42.7
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.0e-35 155.2 218 40.8
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 1.3e-33 148.3 88 72.7
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 9.1e-32 142.1 165 47.9
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 8.0e-28 129.0 75 77.3
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 2.3e-27 127.5 138 50.7
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.3e-26 123.6 234 38.5
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 1.2e-23 115.2 274 32.1
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 2.7e-20 104.0 72 72.2
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 3.6e-20 103.6 156 42.3
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 4.0e-19 100.1 67 73.1
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.2e-18 98.6 62 75.8
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 2.6e-18 97.4 103 52.4
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 9.1e-16 89.0 69 59.4
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 1.2e-12 78.6 63 61.9
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 1.8e-11 74.7 202 28.7
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 3.7e-09 67.0 83 42.2
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 6.3e-09 66.2 39 69.2
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 1.8e-08 64.7 38 65.8
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 2.9e-06 57.4 32 84.4


User provided reference genes

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