Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 0.0e+00 1375.1 696 100.0
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 0.0e+00 1139.8 729 83.4
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 3.0e-240 835.5 803 59.7
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 5.1e-232 808.1 840 56.3
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 1.1e-104 385.2 700 38.9
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 1.2e-103 381.7 736 37.9
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 3.1e-88 330.5 736 34.0
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 7.0e-88 329.3 724 34.7
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 1.5e-85 321.6 728 32.8
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 1.5e-82 311.6 694 35.3
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 2.0e-82 311.2 651 34.1
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 1.6e-79 301.6 731 31.5
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 2.9e-78 297.4 708 32.8
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 8.6e-78 295.8 702 31.9
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.1e-76 291.2 706 31.7
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 4.7e-76 290.0 723 31.8
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 4.4e-74 283.5 724 31.4
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.3e-73 282.0 769 30.4
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.7e-73 281.6 737 31.6
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 2.4e-72 277.7 745 30.1
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 3.2e-72 277.3 720 30.7
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 4.1e-72 276.9 723 31.3
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 5.4e-72 276.6 755 30.9
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 2.0e-71 274.6 713 30.7
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 4.6e-71 273.5 716 31.8
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 6.6e-70 269.6 730 30.0
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 2.5e-69 267.7 717 30.5
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 2.5e-69 267.7 712 30.5
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 3.3e-69 267.3 725 29.8
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 4.3e-69 266.9 735 29.7
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.6e-69 266.5 747 29.9
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 5.6e-69 266.5 708 31.9
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 7.3e-69 266.2 734 29.4
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 9.5e-69 265.8 741 30.0
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 6.8e-67 259.6 839 28.6
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 6.8e-67 259.6 726 30.4
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 3.4e-66 257.3 767 30.1
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.7e-65 255.0 750 32.1
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 6.4e-65 253.1 708 31.6
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.4e-64 251.1 835 29.1
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 3.2e-64 250.8 718 31.5
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.1e-64 250.4 754 28.9
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.4e-64 250.0 706 29.7
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 9.2e-64 249.2 330 43.9
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 1.2e-63 248.8 739 29.0
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 4.6e-63 246.9 736 30.6
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 1.0e-62 245.7 748 27.9
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 5.1e-62 243.4 714 29.3
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.6e-62 243.0 728 29.8
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 8.6e-62 242.7 696 28.9
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.9e-61 241.5 721 29.1
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.1e-60 238.0 781 27.5
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 2.1e-60 238.0 744 28.5
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 2.8e-60 237.7 629 31.3
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.6e-60 237.3 733 28.5
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 2.3e-59 234.6 714 30.7
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.0e-59 233.8 710 28.2
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 2.6e-58 231.1 707 28.9
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 2.6e-58 231.1 727 28.9
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 5.8e-58 229.9 724 28.3
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 1.3e-57 228.8 214 54.7
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.7e-57 228.4 797 29.4
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.7e-57 228.4 659 28.7
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 8.3e-57 226.1 756 28.2
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.1e-56 225.7 301 41.2
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 1.4e-56 225.3 705 28.1
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.4e-56 225.3 701 29.1
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 5.4e-56 223.4 698 28.4
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 5.4e-56 223.4 720 28.8
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 1.6e-55 221.9 710 29.9
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 2.1e-55 221.5 648 28.1
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 2.7e-55 221.1 701 29.0
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 6.0e-55 219.9 304 43.4
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 3.9e-54 217.2 702 28.8
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 5.1e-54 216.9 704 29.4
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.9e-53 214.9 689 30.0
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 2.5e-53 214.5 690 29.1
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 2.5e-53 214.5 691 29.1
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 3.3e-53 214.2 688 29.2
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.6e-53 213.4 304 43.8
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 7.3e-53 213.0 307 43.3
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 4.7e-52 210.3 689 29.6
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 5.2e-51 206.8 303 40.3
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 6.8e-51 206.5 704 28.7
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 1.5e-50 205.3 753 27.1
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 2.6e-50 204.5 719 28.0
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.6e-50 204.5 307 39.4
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 1.7e-49 201.8 713 27.2
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.9e-49 201.1 729 28.4
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 3.8e-49 200.7 700 28.3
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 5.4e-48 196.8 472 33.1
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 1.6e-47 195.3 727 26.8
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.6e-47 195.3 663 27.5
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.1e-47 194.9 314 37.6
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.5e-47 194.1 659 29.0
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.0e-47 193.4 313 39.6
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 7.8e-47 193.0 252 46.0
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.7e-46 191.8 344 37.8
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.7e-46 191.8 679 28.3
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 2.3e-46 191.4 300 41.7
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.3e-46 191.4 739 26.7
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 4.3e-45 187.2 624 29.5
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 1.6e-44 185.3 304 39.5
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.8e-44 183.7 214 45.8
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.8e-44 183.7 221 44.8
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.8e-43 181.8 221 44.8
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.8e-43 181.8 299 39.1
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.2e-42 179.1 330 37.0
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.4e-42 177.2 609 28.4
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 9.9e-42 176.0 334 37.4
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 1.3e-41 175.6 478 29.5
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 6.4e-41 173.3 337 36.5
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 1.9e-40 171.8 217 45.2
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 2.4e-40 171.4 242 41.7
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 2.4e-40 171.4 298 37.2
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-39 169.1 276 40.6
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.3e-38 165.6 797 24.2
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.4e-32 144.8 482 28.4
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 2.1e-31 141.7 258 39.1
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 3.7e-28 131.0 216 37.0
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 3.1e-27 127.9 426 27.5
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 6.5e-25 120.2 612 24.2
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 6.5e-25 120.2 229 34.5
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 7.9e-23 113.2 214 36.0
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 2.3e-22 111.7 134 42.5
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 2.3e-22 111.7 166 43.4
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 8.7e-22 109.8 135 45.9
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 8.7e-22 109.8 135 45.9
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 7.4e-21 106.7 456 21.9
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 9.6e-21 106.3 164 38.4
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 4.1e-19 100.9 152 38.2
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 1.3e-17 95.9 155 38.1
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 1.7e-17 95.5 283 27.6
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 1.9e-16 92.0 158 36.7
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 5.5e-16 90.5 118 40.7
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 9.3e-16 89.7 155 36.8
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 2.1e-15 88.6 154 37.0
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 6.1e-15 87.0 116 40.5
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 7.9e-15 86.7 176 31.8
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 1.8e-14 85.5 166 34.3
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 3.9e-14 84.3 169 34.3
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 4.3e-13 80.9 179 32.4
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 2.4e-11 75.1 95 41.1
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 5.3e-11 73.9 127 33.1
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.7e-09 68.9 143 32.9
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 1.4e-08 65.9 119 38.7
Lj8A15T43 Lonicera japonica HOM05D004076 ORTHO05D004606 4.2e-08 64.3 99 38.4
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 3.0e-06 58.2 149 26.8
BcaC07g42098 Brassica carinata HOM05D004076 ORTHO05D004606 6.7e-06 57.0 95 33.7


User provided reference genes

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