Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002472g0100 Nicotiana tabacum HOM05D000184 ORTHO05D000032 8.9e-95 350.5 210 100.0
MD13G1070900 Malus domestica HOM05D000184 ORTHO05D000032 3.1e-23 112.8 203 41.9
CAN.G1604.3 Capsicum annuum HOM05D000184 ORTHO05D000032 5.9e-22 108.6 168 44.6
Dinv34145 Davidia involucrata HOM05D000184 ORTHO05D000032 2.9e-21 106.3 186 43.0
Gohir.A04G147200 Gossypium hirsutum HOM05D000184 ORTHO05D000032 1.2e-19 100.9 212 41.0
Nitab4.5_0000040g0300 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.6e-19 100.5 190 38.9
Oeu014036.1 Olea europaea HOM05D000184 ORTHO05D000032 2.1e-19 100.1 214 36.0
Sabra10G0127700 Salix brachista HOM05D000184 ORTHO05D000032 1.0e-18 97.8 192 39.1
Nitab4.5_0003995g0010 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.4e-18 97.4 189 38.6
Hma1.2p1_0795F.1_g218940 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 1.5e-17 94.0 199 37.7
Gohir.D04G191600 Gossypium hirsutum HOM05D000184 ORTHO05D000032 5.7e-17 92.0 212 37.3
PGSC0003DMG400018426 Solanum tuberosum HOM05D000184 ORTHO05D000032 2.2e-16 90.1 200 37.0
DCAR_031015 Daucus carota HOM05D000184 ORTHO05D000032 8.2e-16 88.2 200 38.0
Duzib251G0513 Durio zibethinus HOM05D000184 ORTHO05D000032 1.1e-15 87.8 194 38.1
Hma1.2p1_1297F.1_g273980 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 1.1e-15 87.8 198 46.5
Cfa008970 Carpinus fangiana HOM05D000506 ORTHO05D000369 1.8e-15 87.0 212 46.7
Sopen05g003740 Solanum pennellii HOM05D000184 ORTHO05D000032 1.2e-14 84.3 201 35.8
Solyc05g007890.4 Solanum lycopersicum HOM05D000184 ORTHO05D000032 1.5e-14 84.0 200 35.5
Cc11_g12890 Coffea canephora HOM05D000184 ORTHO05D000032 3.4e-14 82.8 205 36.6
QL03p068721 Quercus lobata HOM05D000184 ORTHO05D000032 3.4e-14 82.8 214 35.5
Haze_12001 Corylus avellana HOM05D000184 ORTHO05D000032 5.9e-14 82.0 212 45.3
Cpa.g.sc128.40 Carica papaya HOM05D000184 ORTHO05D000032 1.0e-13 81.3 207 38.2
Oeu005059.1 Olea europaea HOM05D000184 ORTHO05D000032 1.3e-13 80.9 216 31.9
TAR374G0944 Trochodendron aralioides HOM05D000184 ORTHO05D000032 1.3e-13 80.9 77 64.9
CSS0018618 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 2.9e-13 79.7 184 38.6
MBI05_g42873_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 2.9e-13 79.7 82 59.8
CiPaw.06G086100 Carya illinoinensis HOM05D000184 ORTHO05D000032 6.5e-13 78.6 213 34.3
Gohir.A03G101500 Gossypium hirsutum HOM05D000184 ORTHO05D000032 1.1e-12 77.8 213 46.0
Gohir.D13G075600 Gossypium hirsutum HOM05D000184 ORTHO05D000032 1.1e-12 77.8 184 35.3
A07p31510 Brassica napus HOM05D000184 ORTHO05D000032 1.4e-12 77.4 91 54.9
BraA07t30783Z Brassica rapa HOM05D000184 ORTHO05D000032 1.4e-12 77.4 91 54.9
Actinidia19879 Actinidia chinensis HOM05D000184 ORTHO05D000032 3.2e-12 76.3 212 33.5
Gorai.005G141900 Gossypium raimondii HOM05D000184 ORTHO05D000032 3.2e-12 76.3 213 43.2
Thecc.02G344600 Theobroma cacao HOM05D000184 ORTHO05D000032 3.2e-12 76.3 211 34.6
Gohir.D02G126300 Gossypium hirsutum HOM05D000184 ORTHO05D000032 5.5e-12 75.5 213 44.6
Rhsim12G0064200 Rhododendron simsii HOM05D000184 ORTHO05D000032 5.5e-12 75.5 79 62.0
BcaC08g45882 Brassica carinata HOM05D000184 ORTHO05D000032 7.2e-12 75.1 91 53.8
BolC6t38791H Brassica oleracea HOM05D000184 ORTHO05D000032 7.2e-12 75.1 91 53.8
Gorai.013G086300 Gossypium raimondii HOM05D000184 ORTHO05D000032 1.2e-11 74.3 206 33.5
MBI02_g15398_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 1.2e-11 74.3 212 33.5
Manes.01G035100 Manihot esculenta HOM05D000184 ORTHO05D000032 1.2e-11 74.3 204 33.8
Prupe.1G275900 Prunus persica HOM05D000184 ORTHO05D000032 1.2e-11 74.3 210 32.4
Dinv16656 Davidia involucrata HOM05D000184 ORTHO05D000032 1.6e-11 73.9 208 32.2
Sabra08G0065300 Salix brachista HOM05D000184 ORTHO05D000032 2.1e-11 73.6 88 56.8
SGA_v2.0_scaffold302G47809 Striga asiatica HOM05D000184 ORTHO05D000032 2.1e-11 73.6 79 54.4
GSVIVG01033381001 Vitis vinifera HOM05D000184 ORTHO05D000032 2.1e-11 73.6 78 57.7
BcaC07g39271 Brassica carinata HOM05D000184 ORTHO05D000032 3.6e-11 72.8 76 60.5
C06p36800 Brassica napus HOM05D000184 ORTHO05D000032 3.6e-11 72.8 91 51.6
Duzib177G0153 Durio zibethinus HOM05D000184 ORTHO05D000032 4.7e-11 72.4 81 58.0
Gorai.012G187000 Gossypium raimondii HOM05D000184 ORTHO05D000032 6.1e-11 72.0 212 34.0
Potri.008G087600 Populus trichocarpa HOM05D000184 ORTHO05D000032 7.9e-11 71.6 88 55.7
FvH4_4g31230 Fragaria vesca HOM05D000184 ORTHO05D000032 1.0e-10 71.2 201 32.3
FAN12G3481 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.0e-10 71.2 201 32.3
FAN17G0546 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.0e-10 71.2 201 34.8
MSTRG.13424 Avicennia marina HOM05D000184 ORTHO05D000032 2.3e-10 70.1 240 28.8
Duzib248G0760 Durio zibethinus HOM05D000184 ORTHO05D000032 2.3e-10 70.1 228 30.3
CANSAT64G1725 Cannabis sativa HOM05D000184 ORTHO05D000032 3.0e-10 69.7 213 32.9
Lalb_Chr17g0340761 Lupinus albus HOM05D000184 ORTHO05D000032 3.0e-10 69.7 201 30.3
RcHm_v2.0_Chr4g0439621 Rosa chinensis HOM05D000184 ORTHO05D000032 5.1e-10 68.9 202 33.2
Manes.05G101800 Manihot esculenta HOM05D000184 ORTHO05D000032 6.7e-10 68.6 200 32.5
Os08g0434700 Oryza sativa ssp. japonica HOM05D000184 ORTHO05D000032 6.7e-10 68.6 68 63.2
MBI19_g09313_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 8.8e-10 68.2 80 53.8
TAR629G2647 Trochodendron aralioides HOM05D000184 ORTHO05D000032 1.5e-09 67.4 207 34.3
CiPaw.05G133800 Carya illinoinensis HOM05D000184 ORTHO05D000032 2.0e-09 67.0 213 31.9
Migut.L01279 Erythranthe guttata HOM05D000184 ORTHO05D000032 2.0e-09 67.0 206 31.6
FAN07G0534 Fragaria x ananassa HOM05D000506 ORTHO05D000369 2.0e-09 67.0 201 31.3
MD16G1071600 Malus domestica HOM05D000184 ORTHO05D000032 2.0e-09 67.0 223 30.9
TPR.G39163 Trifolium pratense HOM05D000184 ORTHO05D000032 2.6e-09 66.6 217 29.5
GSVIVG01019971001 Vitis vinifera HOM05D000184 ORTHO05D000032 2.6e-09 66.6 189 31.2
Ah.03g134940 Amaranthus hybridus HOM05D000184 ORTHO05D000032 3.3e-09 66.2 207 30.4
CARHR194820 Cardamine hirsuta HOM05D000184 ORTHO05D000032 3.3e-09 66.2 71 60.6
Gohir.A13G075400 Gossypium hirsutum HOM05D000184 ORTHO05D000032 3.3e-09 66.2 177 34.5
Lalb_Chr16g0385771 Lupinus albus HOM05D000184 ORTHO05D000032 3.3e-09 66.2 61 67.2
Ciclev10031937m.g Citrus clementina HOM05D000184 ORTHO05D000032 4.4e-09 65.9 104 45.2
Glyma.01G049100 Glycine max HOM05D000184 ORTHO05D000032 4.4e-09 65.9 183 34.4
Psat7g161240 Pisum sativum HOM05D000184 ORTHO05D000032 4.4e-09 65.9 83 51.8
Actinidia31901 Actinidia chinensis HOM05D000184 ORTHO05D000032 7.4e-09 65.1 108 42.6
Lj6A786T67 Lonicera japonica HOM05D000184 ORTHO05D000032 7.4e-09 65.1 199 36.2
HPP92_016836 Vanilla planifolia HOM05D000184 ORTHO05D000032 7.4e-09 65.1 65 56.9
Potri.010G167901 Populus trichocarpa HOM05D000184 ORTHO05D000032 9.7e-09 64.7 88 51.1
Glyma.02G070900 Glycine max HOM05D000184 ORTHO05D000032 1.3e-08 64.3 79 54.4
Glyma.12G089100 Glycine max HOM05D000184 ORTHO05D000032 1.7e-08 63.9 73 57.5
Medtr4g081710 Medicago truncatula HOM05D000184 ORTHO05D000032 1.7e-08 63.9 210 29.0
Atru.chr11.1770 Acer truncatum HOM05D000184 ORTHO05D000032 4.8e-08 62.4 212 33.5
MSTRG.7795 Avicennia marina HOM05D000184 ORTHO05D000032 4.8e-08 62.4 205 29.8
Phvul.002G170700 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 4.8e-08 62.4 80 51.2
Duzib268G1327 Durio zibethinus HOM05D000184 ORTHO05D000032 6.3e-08 62.0 210 31.4
Migut.E00086 Erythranthe guttata HOM05D000184 ORTHO05D000032 6.3e-08 62.0 204 30.4
MSTRG.707 Avicennia marina HOM05D000184 ORTHO05D000032 8.2e-08 61.6 71 53.5
FAN22G1399 Fragaria x ananassa HOM05D000506 ORTHO05D000369 8.2e-08 61.6 197 31.0
FAN23G2232 Fragaria x ananassa HOM05D000184 ORTHO05D000032 8.2e-08 61.6 75 50.7
FAN26G2253 Fragaria x ananassa HOM05D000184 ORTHO05D000032 8.2e-08 61.6 75 50.7
Thhalv10018902m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 1.4e-07 60.8 80 51.2
AL2G28720 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 1.8e-07 60.5 79 48.1
Eucgr.G02494 Eucalyptus grandis HOM05D000184 ORTHO05D000032 1.8e-07 60.5 210 31.9
HanXRQChr17g0570811 Helianthus annuus HOM05D000184 ORTHO05D000032 1.8e-07 60.5 188 33.0
Nn3g17261 Nelumbo nucifera HOM05D000184 ORTHO05D000032 1.8e-07 60.5 80 52.5
VMungo1215G1679 Vigna mungo HOM05D000184 ORTHO05D000032 1.8e-07 60.5 223 30.9
Peaxi162Scf00222g00527 Petunia axillaris HOM05D000184 ORTHO05D000032 2.4e-07 60.1 80 53.8
Phvul.002G084100 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 2.4e-07 60.1 181 34.3
THA.LOC104822052 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 2.4e-07 60.1 80 48.8
Aqoxy3G03418 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 3.1e-07 59.7 77 51.9
AT1G69580 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 3.1e-07 59.7 79 46.8
BcaC07g39270 Brassica carinata HOM05D000184 ORTHO05D000032 3.1e-07 59.7 76 53.9
C08p22800 Brassica napus HOM05D000184 ORTHO05D000032 3.1e-07 59.7 76 53.9
BolC8t49916H Brassica oleracea HOM05D000184 ORTHO05D000032 3.1e-07 59.7 76 53.9
Lsat_1_v5_gn_4_9740 Lactuca sativa HOM05D000184 ORTHO05D000032 4.1e-07 59.3 183 34.4
vmacro01264 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 4.1e-07 59.3 78 52.6
Ah.02g129640 Amaranthus hybridus HOM05D000506 ORTHO05D000369 5.3e-07 58.9 185 31.9
arahy.Tifrunner.gnm1.ann1.YIX46G Arachis hypogaea HOM05D000184 ORTHO05D000032 5.3e-07 58.9 218 30.3
ECA234G1444 Erigeron canadensis HOM05D000184 ORTHO05D000032 5.3e-07 58.9 183 33.3
Oeu022761.1 Olea europaea HOM05D000184 ORTHO05D000032 5.3e-07 58.9 86 52.3
Actinidia17308 Actinidia chinensis HOM05D000184 ORTHO05D000032 7.0e-07 58.5 82 46.3
HanXRQChr14g0438951 Helianthus annuus HOM05D000184 ORTHO05D000032 7.0e-07 58.5 45 66.7
SGA_v2.0_scaffold239G44012 Striga asiatica HOM05D000184 ORTHO05D000032 7.0e-07 58.5 40 75.0
CSS0045704 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 9.1e-07 58.2 90 46.7
Ca_03181_v3 Cicer arietinum L. HOM05D000184 ORTHO05D000032 9.1e-07 58.2 40 72.5
Glyma.08G163500 Glycine max HOM05D000184 ORTHO05D000032 9.1e-07 58.2 40 72.5
Lj2g0000003 Lotus japonicus HOM05D000184 ORTHO05D000032 9.1e-07 58.2 204 31.4
Lj3g0024590 Lotus japonicus HOM05D000184 ORTHO05D000032 9.1e-07 58.2 40 72.5
Lalb_Chr20g0108411 Lupinus albus HOM05D000184 ORTHO05D000032 9.1e-07 58.2 40 72.5
Lalb_Chr25g0284331 Lupinus albus HOM05D000184 ORTHO05D000032 9.1e-07 58.2 40 72.5
MBI02_g41578_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 9.1e-07 58.2 40 72.5
Medtr6g444980 Medicago truncatula HOM05D000184 ORTHO05D000032 9.1e-07 58.2 40 72.5
Phvul.005G047600 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 9.1e-07 58.2 40 72.5
Psat1g015520 Pisum sativum HOM05D000184 ORTHO05D000032 9.1e-07 58.2 40 72.5
TPR.G7027 Trifolium pratense HOM05D000184 ORTHO05D000032 9.1e-07 58.2 40 72.5
VMungo1080G1552 Vigna mungo HOM05D000184 ORTHO05D000032 9.1e-07 58.2 40 72.5
BcaB03g14089 Brassica carinata HOM05D000184 ORTHO05D000032 1.2e-06 57.8 87 42.5
Carub.0002s1625 Capsella rubella HOM05D000184 ORTHO05D000032 1.2e-06 57.8 77 49.4
DCAR_007159 Daucus carota HOM05D000184 ORTHO05D000032 1.2e-06 57.8 182 39.0
Manes.16G048201 Manihot esculenta HOM05D000184 ORTHO05D000032 1.2e-06 57.8 40 75.0
AT5G18240 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 1.5e-06 57.4 71 54.9
MSTRG.16091 Avicennia marina HOM05D000184 ORTHO05D000032 1.5e-06 57.4 40 72.5
AUR62032797 Chenopodium quinoa HOM05D000184 ORTHO05D000032 1.5e-06 57.4 181 33.1
Nitab4.5_0000381g0220 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.5e-06 57.4 84 47.6
Potri.008G081800 Populus trichocarpa HOM05D000184 ORTHO05D000032 1.5e-06 57.4 40 75.0
SGA_v2.0_scaffold472G52102 Striga asiatica HOM05D000184 ORTHO05D000032 1.5e-06 57.4 46 65.2
arahy.Tifrunner.gnm1.ann1.D45LZI Arachis hypogaea HOM05D000216 ORTHO05D001131 2.0e-06 57.0 218 29.8
AUR62005806 Chenopodium quinoa HOM05D000184 ORTHO05D000032 2.0e-06 57.0 186 32.8
Ca_02461_v3 Cicer arietinum L. HOM05D000184 ORTHO05D000032 2.0e-06 57.0 40 72.5
Nitab4.5_0003610g0020 Nicotiana tabacum HOM05D000184 ORTHO05D000032 2.0e-06 57.0 80 48.8
Psat4g146200 Pisum sativum HOM05D000184 ORTHO05D000032 2.0e-06 57.0 40 72.5
Sp3g03010 Schrenkiella parvula HOM05D000184 ORTHO05D000032 2.0e-06 57.0 71 56.3
Migut.M01502 Erythranthe guttata HOM05D000184 ORTHO05D000032 2.6e-06 56.6 40 72.5
FAN11G0390 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.6e-06 56.6 40 72.5
FAN16G0415 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.6e-06 56.6 40 72.5
FAN21G2684 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.6e-06 56.6 40 72.5
Medtr5g041350 Medicago truncatula HOM05D000184 ORTHO05D000032 2.6e-06 56.6 69 49.3
Oeu022106.1 Olea europaea HOM05D000184 ORTHO05D000032 2.6e-06 56.6 35 82.9
Solyc10g083340.3 Solanum lycopersicum HOM05D000184 ORTHO05D000032 2.6e-06 56.6 80 47.5
MSTRG.7093 Avicennia marina HOM05D000184 ORTHO05D000032 3.5e-06 56.2 88 40.9
CANSAT78G0240 Cannabis sativa HOM05D000184 ORTHO05D000032 3.5e-06 56.2 75 52.0
SalBow8G3100 Salvia bowleyana HOM05D000184 ORTHO05D000032 3.5e-06 56.2 39 74.4
SalBow8G4083 Salvia bowleyana HOM05D000184 ORTHO05D000032 3.5e-06 56.2 39 74.4
TPR.G9394 Trifolium pratense HOM05D000184 ORTHO05D000032 3.5e-06 56.2 66 50.0
VMungo0251G2982 Vigna mungo HOM05D000184 ORTHO05D000032 3.5e-06 56.2 100 38.0
HanXRQChr12g0380801 Helianthus annuus HOM05D000184 ORTHO05D000032 4.5e-06 55.8 183 32.2
Oeu038422.1 Olea europaea HOM05D000184 ORTHO05D000032 4.5e-06 55.8 211 29.9
SEGI_33608 Sequoiadendron giganteum HOM05D000184 ORTHO05D000032 4.5e-06 55.8 39 74.4
Hund25227 Selenicereus undatus HOM05D000184 ORTHO05D000032 5.9e-06 55.5 205 31.2
Zm00001eb335580 Zea mays HOM05D000184 ORTHO05D000032 5.9e-06 55.5 75 50.7
Gorai.005G033900 Gossypium raimondii HOM05D000184 ORTHO05D000032 7.7e-06 55.1 68 55.9
Os06g0664800 Oryza sativa ssp. japonica HOM05D000184 ORTHO05D000032 7.7e-06 55.1 40 62.5


User provided reference genes

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