Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 0.0e+00 1077.0 542 100.0
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 6.3e-302 1040.0 542 96.5
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 1.1e-290 1002.7 542 92.6
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 2.3e-288 995.0 542 92.3
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 9.7e-279 963.0 542 89.3
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 1.8e-269 932.2 544 87.1
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 5.5e-266 920.6 517 88.0
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 2.1e-241 839.0 543 78.1
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 4.6e-236 821.2 543 77.3
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 7.8e-236 820.5 548 76.6
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 3.0e-235 818.5 535 77.9
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 5.6e-234 814.3 545 76.0
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 1.6e-233 812.8 542 75.6
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 8.1e-233 810.4 529 77.3
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 8.9e-232 807.0 543 76.1
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 8.9e-232 807.0 542 76.0
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.5e-231 806.2 544 75.4
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 2.6e-231 805.4 532 76.9
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 2.9e-230 802.0 537 76.2
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 3.7e-230 801.6 534 76.2
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 6.4e-230 800.8 537 76.5
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.2e-228 796.6 550 75.5
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 2.7e-228 795.4 531 74.8
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 1.3e-227 793.1 533 75.4
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 3.3e-226 788.5 539 72.7
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 5.6e-226 787.7 528 75.9
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 5.6e-226 787.7 545 74.7
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 2.1e-225 785.8 549 74.3
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 2.1e-225 785.8 531 75.5
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 2.1e-225 785.8 532 74.1
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.8e-225 785.4 544 74.4
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 3.6e-225 785.0 541 74.1
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 4.7e-225 784.6 543 72.4
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 8.1e-225 783.9 534 74.3
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 3.1e-224 781.9 538 73.0
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 4.0e-224 781.6 544 73.9
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 4.0e-224 781.6 542 73.1
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 5.2e-224 781.2 528 76.1
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 8.9e-224 780.4 549 74.1
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 2.0e-223 779.2 527 74.8
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 2.0e-223 779.2 544 73.5
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 4.4e-223 778.1 531 73.6
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 5.8e-223 777.7 531 73.6
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.2e-222 775.8 522 74.9
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 2.2e-222 775.8 529 73.5
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 2.9e-222 775.4 526 74.7
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.4e-221 772.3 526 74.5
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 3.2e-221 771.9 528 74.2
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 6.0e-220 767.7 528 73.3
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 6.0e-220 767.7 589 69.3
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 2.5e-218 762.3 534 72.7
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 2.5e-218 762.3 527 73.1
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 5.6e-218 761.1 534 70.8
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 1.3e-217 760.0 556 71.6
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 1.3e-217 760.0 528 73.1
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 1.6e-217 759.6 582 69.9
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 1.1e-216 756.9 528 72.9
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 2.4e-216 755.7 543 72.4
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 3.4e-215 751.9 545 70.8
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 9.9e-215 750.4 543 70.2
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 9.9e-215 750.4 531 72.1
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 1.3e-214 750.0 527 71.7
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 1.7e-214 749.6 543 70.3
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 3.8e-214 748.4 543 70.0
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 4.9e-214 748.0 527 70.4
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 2.4e-213 745.7 545 70.3
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 4.2e-213 745.0 561 67.7
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 5.4e-213 744.6 526 72.8
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 1.2e-212 743.4 531 72.1
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 2.1e-212 742.7 544 69.1
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 2.7e-212 742.3 544 69.1
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 1.0e-211 740.3 544 68.9
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 1.0e-211 740.3 544 68.9
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.3e-211 740.0 527 71.0
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 3.9e-211 738.4 490 76.1
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 4.3e-210 734.9 530 70.2
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 9.6e-210 733.8 560 67.9
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 8.1e-209 730.7 536 70.0
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 7.6e-207 724.2 523 70.9
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 9.9e-207 723.8 523 70.9
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 6.4e-206 721.1 489 74.6
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 3.5e-204 715.3 523 70.6
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 1.3e-203 713.4 526 70.0
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 3.9e-203 711.8 488 75.0
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 3.9e-203 711.8 519 69.2
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.3e-202 708.8 476 73.7
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 1.3e-201 706.8 494 73.7
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.8e-201 705.7 523 69.6
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 8.1e-201 704.1 524 68.3
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 8.4e-198 694.1 517 69.1
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 6.7e-195 684.5 525 66.9
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 5.9e-191 671.4 543 64.5
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 1.3e-190 670.2 534 65.5
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 3.1e-184 649.0 601 62.4
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 1.5e-183 646.7 551 62.8
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 5.5e-181 638.3 414 77.3
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.6e-180 636.7 497 68.0
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 8.2e-169 597.8 407 74.0
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 1.6e-167 593.6 412 72.3
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.7e-145 519.2 555 54.1
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 2.9e-142 509.6 548 54.9
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 6.6e-126 455.3 353 67.4
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 3.6e-116 422.9 545 43.7
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 8.4e-113 411.8 291 71.1
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 2.4e-112 410.2 574 41.1
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 3.3e-109 399.8 529 42.9
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 8.1e-108 395.2 292 68.2
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.3e-105 387.9 261 73.6
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 4.9e-105 386.0 262 74.8
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.2e-104 383.3 553 41.8
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 1.2e-103 381.3 324 63.3
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 7.6e-98 362.1 540 38.9
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 9.3e-88 328.6 425 44.0
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.1e-77 295.0 316 55.1
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 3.4e-74 283.5 628 32.0
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 5.5e-72 276.2 176 76.7
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.3e-68 265.0 285 55.1
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 8.8e-62 242.3 226 58.0
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.5e-56 224.2 162 69.1
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 2.0e-53 214.5 152 68.4
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.9e-49 200.7 100 91.0
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 4.2e-48 196.8 702 26.2
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 3.6e-47 193.7 174 57.5
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.8e-41 173.7 115 74.8
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.1e-40 172.2 127 70.1
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.4e-38 165.2 117 73.5
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 9.5e-32 142.5 97 71.1
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 7.8e-26 122.9 179 38.0
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 7.8e-26 122.9 83 74.7
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.1e-19 100.5 93 53.8
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.0e-17 95.9 98 53.1
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.8e-15 87.8 51 84.3
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 4.6e-10 70.5 163 31.3
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 2.5e-08 64.7 52 67.3
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 1.1e-06 59.3 371 23.5
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 5.2e-06 57.0 40 72.5
PRCOL_00000097 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 8.9e-06 56.2 157 25.5


User provided reference genes

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