Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 0.0e+00 1301.6 685 100.0
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 0.0e+00 1135.2 610 98.7
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 0.0e+00 1111.7 616 93.0
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 0.0e+00 1109.7 612 96.1
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 0.0e+00 1099.3 615 92.0
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 0.0e+00 1097.4 615 91.7
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 4.3e-300 1034.2 599 89.1
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.2e-295 1018.1 601 87.7
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.2e-279 964.9 617 80.2
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 2.3e-277 958.7 615 79.2
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.5e-276 956.1 616 79.7
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 6.3e-275 950.7 611 79.9
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 8.5e-272 940.3 641 75.8
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 9.4e-271 936.8 617 78.1
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.1e-270 935.6 616 77.4
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 6.1e-270 934.1 617 77.5
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 1.0e-269 933.3 617 77.5
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 4.0e-269 931.4 617 78.0
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.2e-268 929.9 615 76.4
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.2e-268 929.9 616 77.1
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 4.8e-267 924.5 617 76.7
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 4.8e-267 924.5 617 76.7
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.8e-266 922.5 617 76.7
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 3.1e-266 921.8 615 75.8
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 5.4e-266 921.0 616 76.1
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 5.4e-266 921.0 617 75.9
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 7.0e-266 920.6 617 76.8
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 9.1e-266 920.2 616 75.6
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 1.2e-265 919.8 616 76.9
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 2.0e-265 919.1 617 76.3
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 5.9e-265 917.5 617 76.7
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 1.0e-264 916.8 617 75.4
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 1.0e-264 916.8 617 76.3
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 2.3e-264 915.6 617 76.2
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 5.0e-264 914.4 616 75.3
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 8.6e-264 913.7 655 73.1
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 1.1e-263 913.3 620 76.6
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 5.5e-263 911.0 616 75.8
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 2.1e-262 909.1 614 76.1
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 3.6e-262 908.3 616 75.2
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 6.1e-262 907.5 617 75.0
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.4e-261 906.4 624 74.4
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 2.3e-261 905.6 616 75.0
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 6.8e-261 904.0 617 74.9
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 6.8e-261 904.0 616 74.8
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.4e-258 895.6 627 73.5
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 4.5e-257 891.3 616 74.0
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 5.9e-257 891.0 616 74.0
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 5.0e-256 887.9 616 73.7
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 6.6e-256 887.5 679 68.6
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 8.6e-256 887.1 616 74.4
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.9e-255 885.9 617 74.1
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 3.3e-255 885.2 608 73.4
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 5.6e-255 884.4 616 74.0
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 9.5e-255 883.6 612 72.9
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 4.7e-254 881.3 615 74.3
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 1.4e-253 879.8 616 73.9
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 1.4e-253 879.8 616 73.5
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 1.4e-253 879.8 574 78.2
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.4e-253 879.8 752 64.4
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 4.0e-253 878.2 612 72.4
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 6.8e-253 877.5 616 72.9
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 6.8e-253 877.5 615 73.7
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 8.9e-253 877.1 610 73.4
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 9.8e-252 873.6 618 72.8
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.7e-251 872.8 615 72.8
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.7e-251 872.8 615 72.8
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 1.4e-250 869.8 617 72.8
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 1.8e-250 869.4 617 72.8
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 5.4e-250 867.8 649 70.1
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 9.2e-250 867.1 643 69.5
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 2.3e-248 862.4 616 72.2
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 5.6e-247 857.8 616 71.8
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.6e-246 856.3 616 71.3
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 4.7e-246 854.7 541 79.7
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 1.4e-245 853.2 613 71.8
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.4e-245 853.2 628 70.1
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 1.5e-244 849.7 613 71.6
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 2.6e-244 849.0 622 70.6
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.3e-243 846.7 623 70.0
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.1e-242 843.6 632 69.8
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.2e-241 840.1 582 73.9
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 3.9e-240 835.1 616 70.0
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 4.0e-237 825.1 639 68.1
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 2.1e-233 812.8 615 67.2
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 6.2e-230 801.2 516 77.7
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 1.4e-229 800.0 516 77.7
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 2.0e-228 796.2 615 66.2
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.7e-222 775.0 618 66.5
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 2.0e-220 769.6 611 66.1
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 1.5e-215 753.4 538 71.9
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 1.5e-215 753.4 512 75.6
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 4.0e-213 745.3 616 62.7
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 3.8e-211 738.8 466 79.0
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 5.3e-205 718.4 515 74.0
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 8.2e-198 694.5 445 78.4
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 6.5e-195 684.9 616 56.0
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 4.3e-191 672.2 620 56.0
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.3e-190 670.6 557 64.8
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 1.3e-179 634.0 615 54.0
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 8.2e-166 588.2 648 47.5
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 4.4e-151 539.3 360 77.5
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 4.7e-145 519.2 337 78.6
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.4e-144 517.7 484 61.0
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.2e-143 514.6 616 46.3
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 2.6e-143 513.5 360 74.7
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 4.9e-134 482.6 616 43.7
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.1e-130 471.5 388 64.7
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 3.6e-129 466.5 364 65.4
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 3.9e-115 419.9 510 44.7
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.7e-110 404.4 597 42.9
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 8.4e-102 375.6 437 53.5
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 6.9e-96 355.9 283 67.8
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 2.9e-94 350.5 452 49.1
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.9e-67 260.4 184 69.6
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.7e-65 255.0 175 74.9
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.8e-64 251.5 171 76.0
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.2e-57 226.1 133 82.7
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.9e-45 188.3 150 64.0
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 6.1e-44 183.3 142 67.6
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.8e-43 179.5 149 63.8
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 3.1e-40 171.0 117 70.9
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.0e-39 168.3 135 63.7
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-37 162.5 122 68.9
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 3.6e-36 157.5 105 70.5
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 6.8e-35 153.3 106 69.8
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.8e-33 147.9 178 48.9
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 1.2e-31 142.5 86 83.7
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 8.6e-30 136.3 98 74.5
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 3.4e-26 124.4 104 63.5
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 5.4e-24 117.1 84 71.4
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 5.0e-22 110.5 53 90.6
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 5.0e-22 110.5 53 90.6
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 3.3e-21 107.8 53 86.8
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 4.7e-20 104.0 117 59.8
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 1.5e-18 99.0 107 46.7
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 7.5e-18 96.7 53 77.4
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 7.5e-18 96.7 53 77.4
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.2e-17 95.1 76 68.4
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 2.4e-16 91.7 53 73.6
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 4.3e-13 80.9 50 72.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 5.6e-13 80.5 73 57.5
Nitab4.5_0001984g0130 Nicotiana tabacum HOM05D004954 ORTHO05D286892 2.1e-12 78.6 62 61.3
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 5.2e-11 73.9 80 48.8
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 3.4e-10 71.2 46 82.6
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 1.7e-09 68.9 54 59.3
Nitab4.5_0000595g0120 Nicotiana tabacum HOM05D004954 ORTHO05D283949 8.3e-09 66.6 49 71.4
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 5.4e-08 63.9 38 71.1
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 9.2e-08 63.2 44 56.8
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 5.1e-06 57.4 53 64.2


User provided reference genes

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