Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.0e-154 549.7 431 100.0
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 4.6e-146 521.9 439 94.1
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.2e-108 396.7 434 81.8
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 8.7e-105 384.8 432 80.8
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.9e-104 383.6 382 82.5
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 2.1e-103 380.2 379 81.3
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 9.6e-96 354.8 385 79.0
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 8.2e-95 351.7 387 78.6
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 7.6e-93 345.1 385 76.4
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 2.7e-90 336.7 392 72.4
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 4.3e-88 329.3 385 76.9
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.8e-86 323.9 392 72.2
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 2.4e-86 323.6 389 73.3
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.4e-86 323.6 429 68.1
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 5.3e-86 322.4 423 68.8
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 2.6e-85 320.1 387 73.1
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 4.5e-85 319.3 382 72.3
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 7.7e-85 318.5 385 70.6
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 7.7e-85 318.5 423 68.3
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 4.2e-83 312.8 380 71.3
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 5.5e-83 312.4 428 68.0
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 2.1e-82 310.5 430 68.1
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 3.6e-82 309.7 366 74.9
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 3.0e-81 306.6 384 73.4
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.1e-80 304.7 378 71.7
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.5e-80 304.3 378 71.4
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.5e-80 304.3 378 71.4
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 2.0e-80 303.9 386 73.6
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 4.3e-80 302.8 387 72.1
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 9.7e-80 301.6 378 70.6
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 9.7e-80 301.6 378 70.6
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 3.7e-79 299.7 386 67.1
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 3.7e-79 299.7 383 70.0
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 4.8e-79 299.3 384 70.3
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 6.3e-79 298.9 387 71.1
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 1.1e-78 298.1 442 69.2
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 1.4e-78 297.7 381 70.3
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.4e-78 297.7 382 72.3
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 2.4e-78 297.0 443 69.5
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.4e-78 297.0 383 71.0
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 4.1e-78 296.2 386 67.9
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 1.2e-77 294.7 377 70.6
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 1.5e-77 294.3 321 77.6
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 2.0e-77 293.9 323 75.9
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.0e-77 293.9 391 71.6
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 2.6e-77 293.5 384 67.7
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 3.4e-77 293.1 388 66.2
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 4.5e-77 292.7 383 70.0
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 5.9e-77 292.4 383 67.4
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.3e-76 291.2 387 70.8
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 3.8e-76 289.7 391 71.4
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 3.8e-76 289.7 388 67.5
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 6.5e-76 288.9 383 68.7
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 8.5e-76 288.5 384 66.7
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 4.2e-75 286.2 388 69.3
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 7.2e-75 285.4 439 65.6
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.6e-74 284.3 427 63.9
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.7e-74 282.7 439 65.4
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 7.9e-74 282.0 387 68.5
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 7.9e-74 282.0 388 68.0
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 1.4e-73 281.2 387 71.3
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 2.3e-73 280.4 384 68.5
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 3.0e-73 280.0 387 71.1
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 3.0e-73 280.0 357 72.8
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 1.1e-72 278.1 390 64.4
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 9.7e-72 275.0 383 66.8
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 9.7e-72 275.0 384 68.0
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 9.7e-72 275.0 387 71.1
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 2.2e-71 273.9 386 67.6
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 2.2e-71 273.9 387 65.4
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 3.7e-71 273.1 385 71.2
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 2.4e-70 270.4 351 68.1
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 3.1e-70 270.0 386 67.4
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 3.1e-70 270.0 379 71.5
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 3.1e-70 270.0 388 68.6
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.3e-70 269.2 353 72.5
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 9.1e-70 268.5 386 65.3
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.2e-69 268.1 386 65.3
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 1.2e-69 268.1 428 65.2
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.5e-69 267.7 381 70.9
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 1.5e-69 267.7 387 68.5
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.0e-69 267.3 379 71.2
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 7.7e-69 265.4 386 70.5
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 2.2e-68 263.8 384 68.0
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 2.9e-68 263.5 326 73.6
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.1e-67 261.5 374 66.8
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.1e-67 261.5 386 65.0
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.5e-67 261.2 373 68.4
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 1.6e-66 257.7 329 72.9
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 6.1e-66 255.8 390 64.6
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 1.4e-65 254.6 369 67.2
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.4e-65 254.6 384 66.4
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 1.8e-65 254.2 370 67.0
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 3.0e-65 253.4 375 68.8
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 3.0e-65 253.4 385 68.1
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 5.2e-65 252.7 388 64.7
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 1.1e-64 251.5 388 65.7
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 2.6e-64 250.4 386 66.6
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 3.3e-64 250.0 382 67.8
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 1.7e-63 247.7 383 64.8
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 2.2e-63 247.3 383 63.4
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 2.2e-63 247.3 389 65.8
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 2.8e-63 246.9 395 63.0
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 4.8e-63 246.1 389 61.7
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.8e-62 244.2 395 62.5
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 5.3e-62 242.7 396 62.1
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 2.6e-61 240.4 388 62.9
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 4.5e-61 239.6 395 63.8
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 4.5e-61 239.6 395 63.8
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 5.9e-61 239.2 386 63.5
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 7.7e-61 238.8 396 63.1
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 7.7e-61 238.8 396 63.1
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 7.7e-61 238.8 396 63.1
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 2.2e-60 237.3 390 62.8
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 2.7e-58 230.3 188 63.8
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 4.7e-58 229.6 386 65.0
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 4.0e-57 226.5 404 58.2
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 5.2e-57 226.1 384 65.1
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 5.2e-57 226.1 390 64.4
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 5.2e-57 226.1 390 64.6
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 4.4e-56 223.0 395 59.0
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 3.7e-55 219.9 385 64.9
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 4.8e-55 219.5 389 63.0
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 1.8e-54 217.6 342 66.4
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 4.1e-54 216.5 380 59.7
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 2.2e-52 210.7 435 56.1
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 6.5e-52 209.1 380 63.7
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 2.1e-50 204.1 372 42.7
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 9.8e-48 195.3 175 69.7
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 6.3e-47 192.6 272 73.9
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 5.0e-44 183.0 165 56.4
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 2.5e-43 180.6 385 59.5
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 2.8e-42 177.2 338 54.1
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 4.7e-42 176.4 196 49.5
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 1.5e-40 171.4 389 58.4
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 3.4e-40 170.2 389 58.1
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 3.4e-40 170.2 389 58.1
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 4.4e-40 169.9 400 57.0
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 1.3e-39 168.3 190 47.9
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.7e-39 167.9 330 64.2
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 1.7e-39 167.9 395 52.2
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 2.2e-39 167.5 376 59.0
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 5.4e-38 162.9 385 56.1
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 7.0e-38 162.5 386 39.1
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.5e-37 160.2 407 55.8
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 5.9e-37 159.5 284 70.8
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 5.0e-36 156.4 328 63.7
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.2e-34 151.8 373 57.6
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 8.9e-33 145.6 403 53.8
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 2.0e-32 144.4 258 70.5
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 7.5e-32 142.5 278 67.6
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 4.1e-30 136.7 390 49.5
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 4.6e-29 133.3 194 40.7
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 5.6e-27 126.3 404 49.8
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.2e-26 125.2 196 37.8
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 3.2e-22 110.5 88 62.5
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 9.2e-22 109.0 242 74.8
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 7.8e-21 105.9 192 35.4
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 6.6e-20 102.8 87 63.2
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 1.2e-18 98.6 117 51.3
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 4.7e-18 96.7 96 54.2
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 2.6e-16 90.9 247 60.7
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 4.4e-16 90.1 160 43.8
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 4.4e-16 90.1 120 40.0
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.1e-11 75.5 86 52.3
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 5.8e-08 63.2 49 57.1
AL2G35820 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.1e-06 58.9 42 59.5
AL6G39660 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.1e-06 58.9 42 59.5
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 1.4e-06 58.5 49 53.1
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 2.4e-06 57.8 45 53.3
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 9.3e-06 55.8 44 52.3


User provided reference genes

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