Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.7e-213 746.1 479 100.0
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 5.5e-193 677.9 478 87.4
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 2.0e-174 616.3 495 76.4
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 2.2e-173 612.8 494 79.4
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 2.4e-172 609.4 482 77.4
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 4.1e-164 582.0 510 69.4
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 5.4e-156 555.1 454 75.6
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 3.4e-142 509.2 272 83.5
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 1.4e-140 503.8 272 83.5
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 6.0e-139 498.4 293 77.1
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 5.1e-138 495.4 274 81.8
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.5e-137 493.0 286 76.9
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 9.6e-137 491.1 268 82.1
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 2.1e-136 490.0 253 87.4
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 3.6e-136 489.2 266 82.3
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.1e-135 487.6 255 84.7
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.8e-135 486.9 264 83.0
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 1.8e-135 486.9 264 83.0
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 2.4e-135 486.5 264 83.0
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.0e-135 485.7 284 77.1
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 5.3e-135 485.3 268 81.7
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 6.9e-135 485.0 268 82.1
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 2.6e-134 483.0 258 83.3
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 4.4e-134 482.3 268 81.3
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 1.7e-133 480.3 288 76.0
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 2.2e-133 479.9 270 81.5
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 2.2e-133 479.9 256 84.4
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 4.9e-133 478.8 268 80.6
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 4.9e-133 478.8 268 79.9
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 8.4e-133 478.0 284 75.7
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 8.4e-133 478.0 252 85.3
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.1e-132 477.6 269 79.9
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.9e-132 476.9 255 82.7
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 2.4e-132 476.5 256 84.0
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 3.2e-132 476.1 269 81.0
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 3.2e-132 476.1 266 81.6
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 3.2e-132 476.1 256 83.6
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 3.2e-132 476.1 254 83.1
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 4.2e-132 475.7 258 82.2
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 5.4e-132 475.3 268 80.6
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 5.4e-132 475.3 255 82.0
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 7.1e-132 474.9 255 81.6
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 9.3e-132 474.6 268 80.6
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 3.5e-131 472.6 270 77.0
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 4.6e-131 472.2 255 82.0
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 4.6e-131 472.2 266 80.1
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 7.9e-131 471.5 268 79.5
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 7.9e-131 471.5 264 80.3
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 7.9e-131 471.5 255 82.4
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 7.9e-131 471.5 255 82.4
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 1.0e-130 471.1 255 81.6
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.0e-130 471.1 254 82.3
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.3e-130 469.9 294 71.8
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 2.3e-130 469.9 270 78.5
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 3.9e-130 469.2 268 78.7
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 5.1e-130 468.8 255 81.6
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 5.1e-130 468.8 266 79.7
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 6.6e-130 468.4 267 79.0
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 8.7e-130 468.0 266 78.9
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 1.5e-129 467.2 268 77.6
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.5e-129 467.2 269 79.6
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 1.9e-129 466.8 290 73.1
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 1.9e-129 466.8 255 82.4
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 2.5e-129 466.5 299 71.6
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 4.3e-129 465.7 268 78.7
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.3e-128 464.2 277 76.9
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 2.1e-128 463.4 270 78.5
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 2.1e-128 463.4 254 80.3
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 4.8e-128 462.2 268 78.0
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 4.8e-128 462.2 274 77.0
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 4.8e-128 462.2 255 79.6
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 8.1e-128 461.5 260 79.6
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.4e-127 460.7 255 80.8
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.4e-127 459.9 269 77.3
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 4.0e-127 459.1 260 79.2
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 4.0e-127 459.1 255 80.4
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 9.0e-127 458.0 255 80.4
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 2.0e-126 456.8 266 77.1
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 2.6e-126 456.4 262 79.0
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 5.8e-126 455.3 256 80.1
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 7.6e-126 454.9 269 77.0
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 7.6e-126 454.9 257 79.8
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 7.6e-126 454.9 277 75.8
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 7.6e-126 454.9 269 77.3
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 2.2e-125 453.4 258 79.1
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 3.8e-125 452.6 256 79.7
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 8.4e-125 451.4 260 76.9
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.4e-124 450.7 271 74.9
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.4e-124 450.7 259 77.2
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 1.9e-124 450.3 253 79.4
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 4.2e-124 449.1 265 75.5
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.2e-123 447.6 253 78.3
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 2.1e-123 446.8 255 78.0
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.8e-122 443.7 265 77.4
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.8e-122 443.7 281 71.2
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 6.7e-122 441.8 234 84.6
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.5e-121 440.7 251 75.7
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.5e-121 440.7 253 79.4
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 7.4e-121 438.3 278 71.6
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 9.6e-121 438.0 267 76.0
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 5.3e-119 432.2 256 75.8
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 5.3e-119 432.2 234 81.2
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.7e-117 427.2 233 81.5
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.2e-117 426.8 258 76.4
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.4e-116 424.1 324 63.0
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 5.5e-116 422.2 258 75.6
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 1.9e-113 413.7 258 73.6
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 6.3e-112 408.7 307 62.9
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 1.2e-110 404.4 240 78.3
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 2.0e-110 403.7 268 69.8
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 2.5e-108 396.7 254 71.7
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 4.6e-107 392.5 268 69.0
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 6.1e-107 392.1 225 78.2
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 5.7e-105 385.6 272 65.4
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.2e-101 373.6 218 75.2
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 4.2e-100 369.4 254 70.1
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.7e-96 357.5 261 62.8
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 9.1e-95 351.7 250 63.6
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 2.5e-92 343.6 179 86.6
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 7.4e-89 332.0 260 57.7
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.2e-85 320.5 173 83.2
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.2e-85 320.5 173 83.2
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 6.5e-85 318.9 249 60.6
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 8.5e-85 318.5 268 57.8
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.6e-83 314.3 184 78.3
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 1.6e-83 314.3 173 80.9
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.0e-82 311.6 262 57.3
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 8.8e-82 308.5 174 79.9
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 8.8e-82 308.5 190 73.7
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.1e-79 299.7 188 71.8
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.5e-78 296.2 184 73.4
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 6.8e-74 282.3 250 56.4
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 4.4e-73 279.6 249 55.4
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 1.1e-71 275.0 182 68.7
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 1.1e-68 265.0 247 53.0
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.0e-65 254.2 194 59.8
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 1.1e-63 248.4 242 49.2
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.0e-61 241.9 191 60.2
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.5e-60 238.0 265 47.5
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 4.1e-55 219.9 177 62.7
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 1.9e-52 211.1 176 54.0
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 4.3e-52 209.9 125 79.2
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 7.3e-52 209.1 230 48.7
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 4.7e-51 206.5 253 44.3
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 6.2e-51 206.1 129 75.2
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.0e-50 205.3 125 77.6
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 1.2e-46 191.8 175 53.1
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 1.5e-44 184.9 244 41.8
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.4e-41 173.7 103 71.8
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 1.9e-39 167.9 129 59.7
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 3.2e-39 167.2 125 59.2
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 3.6e-35 153.7 88 76.1
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 2.3e-21 107.8 75 62.7
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 4.2e-15 87.0 45 82.2
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 4.2e-15 87.0 45 82.2
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 1.6e-14 85.1 367 25.1
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.1e-07 62.4 165 26.7
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 2.7e-06 57.8 196 28.6


User provided reference genes

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