Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.5e-43 179.1 90 100.0
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 4.1e-33 144.4 92 87.0
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 4.1e-33 144.4 90 81.1
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 5.4e-33 144.1 90 81.1
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 4.3e-30 134.4 90 75.6
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 4.3e-30 134.4 90 75.6
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.1e-29 132.1 90 73.3
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 9.9e-27 123.2 91 70.3
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 1.4e-25 119.4 90 72.2
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 3.2e-25 118.2 91 69.2
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 3.2e-25 118.2 91 69.2
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 4.6e-24 114.4 91 68.1
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.7e-23 112.5 92 68.5
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 9.5e-22 106.7 93 60.2
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 4.7e-21 104.4 90 66.7
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 4.7e-21 104.4 91 64.8
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 6.2e-21 104.0 92 66.3
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 1.1e-20 103.2 91 64.8
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.4e-20 102.8 91 62.6
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.4e-20 102.1 92 65.2
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 3.1e-20 101.7 92 65.2
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 4.0e-20 101.3 93 66.7
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 5.2e-20 100.9 92 66.3
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 8.9e-20 100.1 92 64.1
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.5e-19 99.4 95 63.2
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 2.6e-19 98.6 92 63.0
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 2.6e-19 98.6 92 62.0
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 2.2e-18 95.5 92 60.9
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 3.8e-18 94.7 91 54.9
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 8.4e-18 93.6 79 68.4
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.2e-17 91.7 92 55.4
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 4.2e-17 91.3 92 63.0
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 9.2e-17 90.1 90 62.2
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.6e-16 89.4 91 59.3
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.6e-16 89.4 91 59.3
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.1e-16 89.0 91 61.5
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 2.7e-16 88.6 93 60.2
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 3.5e-16 88.2 92 55.4
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 7.8e-16 87.0 92 60.9
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 1.7e-15 85.9 90 57.8
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 1.7e-15 85.9 91 52.7
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.0e-15 85.1 91 60.4
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.0e-15 85.1 93 52.7
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 3.9e-15 84.7 90 56.7
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 6.6e-15 84.0 91 60.4
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 8.7e-15 83.6 94 54.3
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.5e-14 82.8 94 54.3
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 1.9e-14 82.4 95 52.6
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 3.3e-14 81.6 92 54.3
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 5.6e-14 80.9 90 52.2
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 7.3e-14 80.5 88 58.0
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 7.3e-14 80.5 92 52.2
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.2e-13 79.7 91 59.3
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 1.6e-13 79.3 94 52.1
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.1e-13 79.0 88 56.8
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 2.8e-13 78.6 92 58.7
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 4.7e-13 77.8 90 51.1
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 8.1e-13 77.0 92 53.3
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 8.1e-13 77.0 90 51.1
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 8.1e-13 77.0 91 58.2
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.1e-12 76.6 90 48.9
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 2.4e-12 75.5 90 50.0
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 5.3e-12 74.3 92 48.9
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 6.9e-12 73.9 54 66.7
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 6.9e-12 73.9 90 48.9
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 6.9e-12 73.9 90 53.3
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.5e-11 72.8 99 52.5
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 2.0e-11 72.4 91 49.5
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.0e-11 72.4 90 52.2
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.6e-11 72.0 91 56.0
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 4.4e-11 71.2 92 45.7
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 5.8e-11 70.9 89 48.3
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 5.8e-11 70.9 89 48.3
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 5.8e-11 70.9 90 54.4
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 9.9e-11 70.1 92 50.0
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 1.3e-10 69.7 91 46.2
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.7e-10 69.3 91 52.7
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.2e-10 68.9 91 51.6
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 6.4e-10 67.4 90 46.7
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.1e-09 66.6 90 51.1
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.4e-09 66.2 99 49.5
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 1.9e-09 65.9 95 44.2
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.2e-09 65.1 87 43.7
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.2e-09 64.7 99 48.5
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 4.2e-09 64.7 90 53.3
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 5.4e-09 64.3 99 48.5
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 7.1e-09 63.9 94 44.7
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 7.1e-09 63.9 99 48.5
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 2.1e-08 62.4 92 52.2
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.5e-08 61.6 110 47.3
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.5e-08 61.6 110 47.3
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.5e-08 61.6 90 53.3
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.0e-07 60.1 90 48.9
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.0e-07 60.1 94 51.1
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 1.3e-07 59.7 93 41.9
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.3e-07 59.7 93 41.9
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.7e-07 59.3 85 48.2
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 1.7e-07 59.3 91 48.4
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.3e-07 58.9 82 45.1
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.3e-07 58.9 82 45.1
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 3.0e-07 58.5 90 50.0
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 5.1e-07 57.8 90 51.1
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 5.1e-07 57.8 92 51.1
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 5.1e-07 57.8 94 43.6
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 5.1e-07 57.8 88 46.6
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 6.6e-07 57.4 93 45.2
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 6.6e-07 57.4 86 46.5
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 6.6e-07 57.4 85 44.7


User provided reference genes

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