Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.8e-53 212.2 100 100.0
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 4.5e-20 101.3 58 86.2
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 9.9e-20 100.1 58 86.2
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.7e-19 99.4 58 84.5
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 4.9e-19 97.8 58 82.8
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 6.4e-19 97.4 58 82.8
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 1.1e-18 96.7 58 82.8
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 1.9e-18 95.9 58 79.3
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 2.4e-18 95.5 58 81.0
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.2e-18 95.1 57 82.5
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 3.2e-18 95.1 58 81.0
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 4.2e-18 94.7 85 58.8
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 5.4e-18 94.4 58 81.0
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 5.4e-18 94.4 58 81.0
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 9.3e-18 93.6 58 81.0
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 9.3e-18 93.6 58 79.3
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 1.2e-17 93.2 58 79.3
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 1.2e-17 93.2 58 77.6
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 1.2e-17 93.2 58 77.6
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 2.1e-17 92.4 85 57.6
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 2.7e-17 92.0 58 79.3
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 2.7e-17 92.0 58 79.3
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 3.5e-17 91.7 59 72.9
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.5e-17 91.7 57 80.7
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 4.6e-17 91.3 57 77.2
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 6.0e-17 90.9 58 79.3
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 7.9e-17 90.5 55 81.8
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 1.3e-16 89.7 62 72.6
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 1.3e-16 89.7 62 72.6
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 1.3e-16 89.7 85 58.8
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 2.3e-16 89.0 57 78.9
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 3.0e-16 88.6 58 75.9
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 3.0e-16 88.6 58 75.9
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 3.9e-16 88.2 57 75.4
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 6.7e-16 87.4 57 75.4
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 6.7e-16 87.4 57 75.4
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 6.7e-16 87.4 58 74.1
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 8.7e-16 87.0 108 48.1
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.5e-15 86.3 58 72.4
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 1.9e-15 85.9 57 73.7
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 1.9e-15 85.9 57 73.7
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 1.9e-15 85.9 57 73.7
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 1.9e-15 85.9 58 75.9
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 4.3e-15 84.7 58 77.6
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 4.3e-15 84.7 57 71.9
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 9.6e-15 83.6 62 67.7
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 4.8e-14 81.3 57 70.2
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 8.1e-14 80.5 47 83.0
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 7.6e-12 73.9 55 67.3
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 1.0e-11 73.6 48 72.9
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.5e-09 65.1 41 78.0
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 6.0e-09 64.3 34 85.3
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 6.0e-09 64.3 34 85.3
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 8.7e-08 60.5 43 72.1
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 1.9e-07 59.3 41 75.6
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 4.3e-07 58.2 46 65.2


User provided reference genes

Program Settings