Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002418g0080 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.8e-70 269.2 145 100.0
Nitab4.5_0005246g0040 Nicotiana tabacum HOM05D007924 ORTHO05D007069 3.1e-30 135.6 110 72.7
Nitab4.5_0002326g0030 Nicotiana tabacum HOM05D006320 ORTHO05D007069 6.2e-23 111.3 74 83.8
Nitab4.5_0000172g0580 Nicotiana tabacum HOM05D006320 ORTHO05D007069 2.4e-22 109.4 74 81.1
Nitab4.5_0001152g0710 Nicotiana tabacum HOM05D006320 ORTHO05D007069 2.4e-22 109.4 77 80.5
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 3.1e-22 109.0 77 76.6
CDE02G4101 Ceratophyllum demersum HOM05D006320 ORTHO05D007069 9.0e-22 107.5 74 78.4
Ah.10g028420 Amaranthus hybridus HOM05D006320 ORTHO05D007069 2.0e-21 106.3 74 77.0
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 2.6e-21 105.9 97 62.9
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 2.6e-21 105.9 97 62.9
Dinv06715 Davidia involucrata HOM05D006320 ORTHO05D007069 4.5e-21 105.1 73 79.5
arahy.Tifrunner.gnm1.ann1.5U23EP Arachis hypogaea HOM05D006320 ORTHO05D007069 1.7e-20 103.2 74 75.7
arahy.Tifrunner.gnm1.ann1.YTYD5C Arachis hypogaea HOM05D006320 ORTHO05D007069 1.7e-20 103.2 74 75.7
CsaV3_UNG209120 Cucumis sativus L. HOM05D006320 ORTHO05D007069 1.7e-20 103.2 74 75.7
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.7e-20 103.2 74 77.0
ECA234G4202 Erigeron canadensis HOM05D006320 ORTHO05D007069 1.7e-20 103.2 74 77.0
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 1.7e-20 103.2 74 77.0
Lsat_1_v5_gn_8_111781 Lactuca sativa HOM05D006320 ORTHO05D007069 1.7e-20 103.2 74 77.0
Lalb_Chr00c24g0406831 Lupinus albus HOM05D006320 ORTHO05D007069 1.7e-20 103.2 74 75.7
Lalb_Chr11g0070071 Lupinus albus HOM05D006320 ORTHO05D007069 1.7e-20 103.2 74 75.7
Phvul.005G088454 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 1.7e-20 103.2 74 75.7
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 2.2e-20 102.8 90 68.9
Hma1.2p1_1191F.1_g265490 Hydrangea macrophylla HOM05D006320 ORTHO05D007069 2.2e-20 102.8 74 75.7
arahy.Tifrunner.gnm1.ann1.XSHW5Z Arachis hypogaea HOM05D006320 ORTHO05D007069 2.9e-20 102.4 68 82.4
CANSAT16G0023 Cannabis sativa HOM05D006320 ORTHO05D007069 3.8e-20 102.1 78 73.1
Lalb_Chr10g0093911 Lupinus albus HOM05D006320 ORTHO05D007069 3.8e-20 102.1 74 77.0
RhsimMtG0004200 Rhododendron simsii HOM05D006320 ORTHO05D007069 4.9e-20 101.7 74 75.7
Sc08g0004920 Simmondsia chinensis HOM05D006320 ORTHO05D007069 1.1e-19 100.5 76 72.4
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 1.4e-19 100.1 80 68.8
Gohir.D07G024400 Gossypium hirsutum HOM05D006320 ORTHO05D007069 1.9e-19 99.8 71 78.9
GSVIVG01029662001 Vitis vinifera HOM05D006320 ORTHO05D007069 1.9e-19 99.8 71 78.9
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 2.5e-19 99.4 74 73.0
LjContig00439g0017906 Lotus japonicus HOM05D006320 ORTHO05D007069 2.5e-19 99.4 74 73.0
LjContig00446g0026709 Lotus japonicus HOM05D006320 ORTHO05D007069 2.5e-19 99.4 74 73.0
RcHm_v2.0_MTg0498361 Rosa chinensis HOM05D006320 ORTHO05D007069 2.5e-19 99.4 74 74.3
SalBow1G1899 Salvia bowleyana HOM05D006320 ORTHO05D007069 2.5e-19 99.4 74 73.0
Sed0021840 Sechium edule HOM05D006320 ORTHO05D007069 2.5e-19 99.4 74 73.0
Aqoxy12s033 Aquilegia oxysepala HOM05D006320 ORTHO05D007069 3.2e-19 99.0 74 73.0
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 4.2e-19 98.6 86 70.9
PGR028G0009 Punica granatum HOM05D006320 ORTHO05D007069 5.5e-19 98.2 74 73.0
Phvul.011G124000 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 7.1e-19 97.8 74 71.6
AL5G20340 Arabidopsis lyrata HOM05D006320 ORTHO05D007069 1.2e-18 97.1 74 73.0
AT2G07671 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 1.2e-18 97.1 74 73.0
ATMG01080 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 1.2e-18 97.1 74 73.0
BolSC28t60384H Brassica oleracea HOM05D006320 ORTHO05D007069 1.2e-18 97.1 74 73.0
BolSC28t60392H Brassica oleracea HOM05D006320 ORTHO05D007069 1.2e-18 97.1 74 73.0
BolSC28t60418H Brassica oleracea HOM05D006320 ORTHO05D007069 1.2e-18 97.1 74 73.0
BraSC224t45817Z Brassica rapa HOM05D006320 ORTHO05D007069 1.2e-18 97.1 74 73.0
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.2e-18 97.1 71 76.1
Thhalv10023008m.g Eutrema salsugineum HOM05D006320 ORTHO05D007069 1.2e-18 97.1 74 73.0
Sopen12g013690 Solanum pennellii HOM05D006320 ORTHO05D007069 1.2e-18 97.1 74 74.3
PGSC0003DMG400002202 Solanum tuberosum HOM05D006320 ORTHO05D007069 1.2e-18 97.1 67 79.1
CARHR287930 Cardamine hirsuta HOM05D006320 ORTHO05D007069 1.6e-18 96.7 74 71.6
SHI36586 Sapria himalayana HOM05D000743 ORTHO05D000580 1.6e-18 96.7 74 70.3
SHI46272 Sapria himalayana HOM05D000743 ORTHO05D000580 1.6e-18 96.7 74 71.6
BolC1t03457H Brassica oleracea HOM05D006320 ORTHO05D007069 2.7e-18 95.9 78 71.8
C01p34910 Brassica napus HOM05D006320 ORTHO05D007069 4.6e-18 95.1 70 75.7
SHI40315 Sapria himalayana HOM05D006320 ORTHO05D007069 6.0e-18 94.7 74 70.3
Psat1g120760 Pisum sativum HOM05D012609 ORTHO05D007069 7.9e-18 94.4 67 77.6
CANSAT21G1924 Cannabis sativa HOM05D006320 ORTHO05D007069 1.0e-17 94.0 75 72.0
SHI36772 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-17 94.0 74 70.3
SHI36783 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-17 94.0 74 70.3
CAN.G761.5 Capsicum annuum HOM05D012609 ORTHO05D007069 2.3e-17 92.8 60 85.0
Aa31sc483G20 Aethionema arabicum HOM05D006320 ORTHO05D007069 3.9e-17 92.0 74 73.0
Sc08g0004610 Simmondsia chinensis HOM05D006320 ORTHO05D007069 3.9e-17 92.0 76 71.1
CAN.G547.1 Capsicum annuum HOM05D006320 ORTHO05D007069 5.1e-17 91.7 65 76.9
SHI36018 Sapria himalayana HOM05D000743 ORTHO05D000580 1.1e-16 90.5 74 67.6
SHI37011 Sapria himalayana HOM05D000743 ORTHO05D000580 1.9e-16 89.7 74 66.2
SHI15099 Sapria himalayana HOM05D006320 ORTHO05D007069 3.3e-16 89.0 67 73.1
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 5.7e-16 88.2 73 67.1
SHI34615 Sapria himalayana HOM05D000743 ORTHO05D000580 7.4e-16 87.8 74 66.2
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 9.7e-16 87.4 67 70.1
SHI36936 Sapria himalayana HOM05D000743 ORTHO05D000580 9.7e-16 87.4 74 64.9
SHI39753 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-15 87.0 71 67.6
SHI48649 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-15 87.0 71 67.6
SGA_v2.0_scaffold255G45504 Striga asiatica HOM05D006320 ORTHO05D007069 1.3e-15 87.0 59 79.7
SalBow6G3944 Salvia bowleyana HOM05D006320 ORTHO05D007069 1.6e-15 86.7 71 67.6
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 1.6e-15 86.7 71 66.2
SHI39988 Sapria himalayana HOM05D006320 ORTHO05D007069 2.8e-15 85.9 71 66.2
SHI54307 Sapria himalayana HOM05D006320 ORTHO05D007069 2.8e-15 85.9 71 66.2
SHI38846 Sapria himalayana HOM05D006320 ORTHO05D007069 4.8e-15 85.1 71 66.2
SHI35237 Sapria himalayana HOM05D006320 ORTHO05D007069 8.2e-15 84.3 71 64.8
SHI35484 Sapria himalayana HOM05D006320 ORTHO05D007069 8.2e-15 84.3 71 66.2
SHI46360 Sapria himalayana HOM05D006320 ORTHO05D007069 8.2e-15 84.3 71 64.8
Lsat_1_v5_gn_7_80061 Lactuca sativa HOM05D006320 ORTHO05D007069 1.1e-14 84.0 74 64.9
SalBow8G4348 Salvia bowleyana HOM05D006320 ORTHO05D007069 1.1e-14 84.0 74 67.6
SHI34625 Sapria himalayana HOM05D000743 ORTHO05D000580 1.1e-14 84.0 68 69.1
SHI53429 Sapria himalayana HOM05D006320 ORTHO05D007069 3.1e-14 82.4 71 64.8
SHI49633 Sapria himalayana HOM05D006320 ORTHO05D007069 1.2e-13 80.5 63 71.4
SHI53047 Sapria himalayana HOM05D006320 ORTHO05D007069 1.2e-13 80.5 71 63.4
SHI37852 Sapria himalayana HOM05D006320 ORTHO05D007069 1.5e-13 80.1 74 62.2
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 2.0e-13 79.7 143 44.8
SHI52535 Sapria himalayana HOM05D006320 ORTHO05D007069 2.0e-13 79.7 71 66.2
SHI34993 Sapria himalayana HOM05D006320 ORTHO05D007069 2.6e-13 79.3 62 71.0
SHI35481 Sapria himalayana HOM05D000890 ORTHO05D007069 2.6e-13 79.3 56 76.8
SEGI_10818 Sequoiadendron giganteum HOM05D006320 ORTHO05D007069 3.4e-13 79.0 110 50.0
Peaxi162Scf00828g00512 Petunia axillaris HOM05D006320 ORTHO05D007069 4.5e-13 78.6 47 91.5
Peaxi162Scf03787g00001 Petunia axillaris HOM05D006320 ORTHO05D007069 4.5e-13 78.6 47 91.5
SHI27343 Sapria himalayana HOM05D006320 ORTHO05D007069 4.5e-13 78.6 71 62.0
SHI50161 Sapria himalayana HOM05D006320 ORTHO05D007069 4.5e-13 78.6 71 63.4
SHI37138 Sapria himalayana HOM05D006320 ORTHO05D007069 5.9e-13 78.2 63 69.8
SHI50287 Sapria himalayana HOM05D006320 ORTHO05D007069 5.9e-13 78.2 59 71.2
SHI38101 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-12 77.4 76 59.2
SHI38465 Sapria himalayana HOM05D000743 ORTHO05D000580 1.3e-12 77.0 56 73.2
SHI51203 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-12 77.0 59 71.2
SHI39778 Sapria himalayana HOM05D006320 ORTHO05D007069 1.7e-12 76.6 62 71.0
SHI42051 Sapria himalayana HOM05D006320 ORTHO05D007069 2.2e-12 76.3 71 60.6
SHI36370 Sapria himalayana HOM05D006320 ORTHO05D007069 2.9e-12 75.9 59 71.2
SHI47782 Sapria himalayana HOM05D006320 ORTHO05D007069 2.9e-12 75.9 59 69.5
SHI49662 Sapria himalayana HOM05D006320 ORTHO05D007069 2.9e-12 75.9 71 62.0
CiPaw.06G021700 Carya illinoinensis HOM05D006320 ORTHO05D007069 5.0e-12 75.1 60 65.0
SHI41242 Sapria himalayana HOM05D006320 ORTHO05D007069 5.0e-12 75.1 70 61.4
SHI47632 Sapria himalayana HOM05D006320 ORTHO05D007069 5.0e-12 75.1 59 69.5
SHI36574 Sapria himalayana HOM05D006320 ORTHO05D007069 8.5e-12 74.3 66 62.1
SHI37168 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-11 73.9 63 68.3
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 1.4e-11 73.6 60 63.3
SHI39076 Sapria himalayana HOM05D006320 ORTHO05D007069 1.9e-11 73.2 71 59.2
SHI40933 Sapria himalayana HOM05D000743 ORTHO05D000580 4.2e-11 72.0 61 63.9
Lsat_1_v5_gn_3_89840 Lactuca sativa HOM05D006320 ORTHO05D007069 9.4e-11 70.9 54 75.9
Nitab4.5_0002404g0040 Nicotiana tabacum HOM05D006320 ORTHO05D007069 3.6e-10 68.9 111 44.1
Nitab4.5_0001152g0490 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.4e-09 67.0 66 62.1
SHI41650 Sapria himalayana HOM05D000743 ORTHO05D000580 1.8e-09 66.6 54 66.7
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.3e-09 66.2 49 73.5
Os01g0899275 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 2.3e-09 66.2 40 85.0
SHI25012 Sapria himalayana HOM05D006320 ORTHO05D007069 2.3e-09 66.2 74 51.4
SHI36078 Sapria himalayana HOM05D000743 ORTHO05D007069 6.7e-09 64.7 49 67.3
Haze_26208 Corylus avellana HOM05D006320 ORTHO05D007069 8.8e-09 64.3 66 56.1
Haze_26209 Corylus avellana HOM05D006320 ORTHO05D007069 8.8e-09 64.3 66 56.1
Manes.04G128250 Manihot esculenta HOM05D006320 ORTHO05D007069 1.1e-08 63.9 46 76.1
Nitab4.5_0000172g1000 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.1e-08 63.9 67 59.7
SHI39478 Sapria himalayana HOM05D006320 ORTHO05D007069 1.5e-08 63.5 53 64.2
TAR022G0003 Trochodendron aralioides HOM05D006320 ORTHO05D007069 2.0e-08 63.2 75 56.0
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 2.5e-08 62.8 85 49.4
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 2.5e-08 62.8 85 49.4
Os01g0899350 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 2.5e-08 62.8 40 80.0
SHI39121 Sapria himalayana HOM05D000743 ORTHO05D000580 3.3e-08 62.4 49 63.3
C04p27420 Brassica napus HOM05D006320 ORTHO05D007069 5.7e-08 61.6 47 74.5
Cre17.g731950 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 7.4e-08 61.2 70 47.1
Cre17.g732000 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 7.4e-08 61.2 70 47.1
SHI51623 Sapria himalayana HOM05D006320 ORTHO05D007069 1.7e-07 60.1 48 68.8
EL10Ac6g14143 Beta vulgaris HOM05D010007 ORTHO05D007069 4.8e-07 58.5 41 70.7
CiPaw.04G019500 Carya illinoinensis HOM05D006320 ORTHO05D007069 8.2e-07 57.8 80 45.0
Nitab4.5_0005853g0090 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.8e-06 56.6 45 64.4
Solyc10g049590.1 Solanum lycopersicum HOM05D000216 ORTHO05D007069 2.4e-06 56.2 41 78.0
CAN.G231.25 Capsicum annuum HOM05D006320 ORTHO05D007069 9.1e-06 54.3 53 56.6


User provided reference genes

Program Settings