Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.4e-154 549.7 288 100.0
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 3.0e-133 478.8 289 88.9
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 3.7e-128 461.8 289 86.2
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 2.7e-126 455.7 291 83.2
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 9.5e-124 447.2 289 84.1
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.5e-121 439.9 289 82.7
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 9.6e-100 367.5 287 71.8
Peaxi162Scf01026g00254 Petunia axillaris HOM05D003500 ORTHO05D003919 8.1e-91 337.8 268 71.6
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 4.7e-62 242.3 303 49.8
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 2.2e-51 206.8 295 47.1
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 8.2e-51 204.9 305 44.9
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 3.2e-47 193.0 300 42.3
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 5.2e-45 185.7 296 45.6
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 1.3e-43 181.0 289 43.6
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 4.8e-43 179.1 299 41.1
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 9.1e-42 174.9 302 41.4
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.5e-39 167.5 303 42.2
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 5.7e-36 155.6 309 40.1
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 7.5e-36 155.2 296 39.9
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 6.3e-35 152.1 298 36.9
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 4.1e-34 149.4 272 41.5
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.3e-32 144.4 303 38.0
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.5e-31 141.0 273 38.5
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.9e-31 140.6 303 37.0
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 4.3e-31 139.4 293 34.1
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 7.3e-31 138.7 316 36.4
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 1.6e-30 137.5 294 37.1
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 6.8e-29 132.1 304 35.9
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 7.5e-28 128.6 296 34.1
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.2e-27 127.1 293 34.5
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 6.4e-27 125.6 290 34.5
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 6.4e-27 125.6 287 36.2
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 8.3e-27 125.2 294 34.4
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 8.3e-27 125.2 225 41.8
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.1e-26 124.8 295 35.3
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 1.4e-26 124.4 300 35.3
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 1.4e-26 124.4 293 33.4
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 1.8e-26 124.0 300 36.3
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 7.0e-26 122.1 308 37.7
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 9.2e-26 121.7 319 34.5
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 2.7e-25 120.2 314 34.1
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.7e-25 120.2 309 35.9
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 3.5e-25 119.8 292 34.6
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 4.6e-25 119.4 298 36.6
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 4.6e-25 119.4 302 33.4
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 5.9e-25 119.0 354 31.6
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 1.3e-24 117.9 294 33.0
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 2.3e-24 117.1 293 35.2
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 3.0e-24 116.7 292 36.0
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 3.0e-24 116.7 299 33.4
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 2.5e-23 113.6 305 34.1
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 2.5e-23 113.6 289 32.9
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 7.3e-23 112.1 290 32.8
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 7.3e-23 112.1 292 33.2
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 9.5e-23 111.7 353 31.2
Sopen06g004460 Solanum pennellii HOM05D003500 ORTHO05D003919 9.5e-23 111.7 69 82.6
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 2.1e-22 110.5 302 33.1
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 3.6e-22 109.8 295 32.5
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 6.2e-22 109.0 292 34.2
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 8.0e-22 108.6 298 30.5
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 8.0e-22 108.6 292 32.2
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 8.0e-22 108.6 292 32.2
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 8.0e-22 108.6 294 34.7
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.0e-21 108.2 302 31.8
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.4e-21 107.8 300 34.0
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 1.8e-21 107.5 293 31.4
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.8e-21 107.5 288 32.6
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 1.8e-21 107.5 296 35.1
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 2.3e-21 107.1 283 33.9
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 3.1e-21 106.7 288 32.3
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 3.1e-21 106.7 283 31.1
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 6.8e-21 105.5 291 32.0
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 6.8e-21 105.5 314 30.9
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 8.9e-21 105.1 299 33.1
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 1.2e-20 104.8 295 32.2
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 2.6e-20 103.6 185 40.0
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 3.4e-20 103.2 293 32.8
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 3.4e-20 103.2 289 32.2
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 5.8e-20 102.4 289 32.2
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 7.5e-20 102.1 279 28.3
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 9.8e-20 101.7 281 29.9
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 9.8e-20 101.7 291 30.2
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.3e-19 101.3 302 33.1
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 2.9e-19 100.1 287 30.3
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 8.3e-19 98.6 293 30.7
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 8.3e-19 98.6 289 31.8
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 1.1e-18 98.2 282 32.6
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.4e-18 97.8 292 32.5
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 4.1e-18 96.3 287 31.7
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 9.2e-18 95.1 284 28.5
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.2e-17 94.7 343 28.9
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 2.0e-17 94.0 295 31.2
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 2.7e-17 93.6 291 30.9
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 3.5e-17 93.2 303 29.7
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 4.6e-17 92.8 299 31.4
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 7.8e-17 92.0 285 29.1
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.0e-16 91.7 291 31.6
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 3.0e-16 90.1 306 31.4
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 5.0e-16 89.4 294 31.3
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 1.1e-15 88.2 287 30.3
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.5e-15 87.8 281 28.8
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.5e-15 87.8 281 28.8
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 9.5e-15 85.1 301 29.9
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 9.5e-15 85.1 288 29.5
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 2.8e-14 83.6 291 30.2
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 3.6e-14 83.2 316 30.1
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 4.7e-14 82.8 282 30.1
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 8.1e-14 82.0 283 28.6
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 1.4e-13 81.3 155 34.2
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 1.4e-13 81.3 292 29.1
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 1.8e-13 80.9 155 34.2
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 3.1e-13 80.1 160 34.4
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 3.1e-13 80.1 287 27.5
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 8.9e-13 78.6 297 27.9
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 8.9e-13 78.6 290 28.3
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.2e-12 78.2 282 28.7
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.2e-12 78.2 292 29.8
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.2e-12 78.2 197 33.5
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 1.5e-12 77.8 298 30.9
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 2.0e-12 77.4 286 28.7
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 4.4e-12 76.3 290 29.3
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 5.8e-12 75.9 285 28.4
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 5.8e-12 75.9 296 29.4
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 1.7e-11 74.3 316 26.3
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 1.7e-11 74.3 314 26.1
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 2.2e-11 73.9 290 27.2
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 2.9e-11 73.6 286 29.0
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 4.9e-11 72.8 298 29.5
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 4.9e-11 72.8 285 26.3
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 6.4e-11 72.4 288 27.1
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 6.4e-11 72.4 159 35.2
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 6.4e-11 72.4 307 29.6
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 1.1e-10 71.6 287 27.9
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 1.1e-10 71.6 298 29.2
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 1.4e-10 71.2 308 28.2
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.9e-10 70.9 293 25.9
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.9e-10 70.9 281 28.1
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 2.4e-10 70.5 286 30.4
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 4.1e-10 69.7 293 25.9
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 5.4e-10 69.3 159 35.2
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 5.4e-10 69.3 149 35.6
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 5.4e-10 69.3 301 26.9
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 9.2e-10 68.6 236 28.8
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 1.6e-09 67.8 286 26.2
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 1.6e-09 67.8 137 33.6
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.6e-09 67.8 189 29.6
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.6e-09 67.8 286 28.0
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 1.6e-09 67.8 297 30.0
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 2.1e-09 67.4 134 35.8
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 2.1e-09 67.4 312 25.3
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 2.7e-09 67.0 130 35.4
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 2.7e-09 67.0 145 39.3
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 3.5e-09 66.6 294 29.3
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 3.5e-09 66.6 284 26.8
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 6.0e-09 65.9 197 31.0
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 6.0e-09 65.9 124 36.3
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 7.8e-09 65.5 216 28.7
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 7.8e-09 65.5 284 28.2
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.0e-08 65.1 284 26.4
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.7e-08 64.3 286 27.3
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 2.3e-08 63.9 284 26.8
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 2.3e-08 63.9 198 29.8
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 3.0e-08 63.5 288 28.5
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 3.0e-08 63.5 301 26.6
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 3.9e-08 63.2 293 29.0
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 5.1e-08 62.8 332 28.9
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 6.6e-08 62.4 290 24.1
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.5e-07 61.2 283 25.8
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.9e-07 60.8 132 34.8
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 2.5e-07 60.5 294 25.2
Nn2g11771 Nelumbo nucifera HOM05D003500 ORTHO05D003919 7.3e-07 58.9 184 32.1
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 9.5e-07 58.5 285 24.2
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 1.6e-06 57.8 131 28.2
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.6e-06 57.8 308 26.3
Cpa.g.sc205.12 Carica papaya HOM05D003500 ORTHO05D003919 2.1e-06 57.4 68 51.5
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 3.6e-06 56.6 308 25.6
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 4.7e-06 56.2 289 26.3
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 4.7e-06 56.2 285 25.6
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 6.2e-06 55.8 131 32.1
Mapoly0020s0159 Marchantia polymorpha HOM05D003500 ORTHO05D003919 6.2e-06 55.8 309 25.9
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 8.1e-06 55.5 151 34.4
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 8.1e-06 55.5 151 34.4
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 8.1e-06 55.5 308 26.0


User provided reference genes

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