Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 2491.5 1270 100.0
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 2291.2 1372 87.6
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 2039.6 1467 74.4
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 1603.2 1478 59.2
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 1582.0 1480 58.6
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 1457.6 1490 55.3
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 1455.7 1476 55.4
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 1434.5 1444 55.1
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 1421.0 1477 54.4
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 1417.5 1460 55.1
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 1407.5 1489 53.5
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 1404.8 1486 53.2
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 1397.5 1493 52.9
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 1396.7 1491 52.0
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 1393.6 1484 52.4
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 1388.6 1494 52.6
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1383.6 1494 51.7
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 1381.7 1486 52.3
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 1376.7 1477 52.1
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1376.7 1492 51.9
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 1370.1 1491 52.9
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 1367.1 1484 52.4
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 1359.4 1516 51.2
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 1358.2 1488 52.5
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 1345.5 1499 51.4
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 1344.3 1497 51.6
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1343.2 1476 51.2
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 1339.3 1487 51.2
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 1338.2 1658 48.9
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 1323.9 1531 50.9
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 1319.3 1526 50.7
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 1317.0 1494 50.1
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 1315.4 1501 50.0
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 1315.1 1479 50.2
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 1301.2 1562 49.2
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 1298.5 1485 50.2
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 1298.5 1293 55.8
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 1289.6 1460 50.2
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 1289.6 1459 49.7
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 1289.2 1504 49.9
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 1288.1 1474 49.4
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 1286.6 1462 49.5
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 1279.6 1504 49.3
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 1278.8 1463 49.8
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 1277.3 1451 50.4
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 1275.8 1474 49.6
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 1266.1 1504 49.5
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 1264.2 1462 49.4
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 1250.3 1461 48.7
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 1243.4 1503 49.6
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 1241.9 1482 48.7
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 1228.8 1496 47.9
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 1224.5 1491 48.3
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 1221.1 1472 47.5
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 1218.8 1482 48.4
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 1218.4 1494 48.4
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 1217.6 1469 48.5
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 1214.9 1475 48.1
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 1212.2 1476 48.0
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 1209.1 1472 47.9
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 1196.4 1453 47.8
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 1194.5 1452 47.7
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 1192.6 1461 47.6
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 1191.8 1458 47.7
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 1162.5 1479 47.3
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 1161.0 1476 45.5
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 1120.5 1468 46.2
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 1104.4 1499 44.5
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 1097.0 1468 45.8
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 1094.3 1183 52.5
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 1.4e-299 1033.5 1171 50.3
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 6.6e-294 1014.6 969 57.7
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 1.5e-293 1013.4 1176 49.7
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 9.9e-282 974.2 716 70.9
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 3.0e-278 962.6 1462 41.4
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 1.1e-267 927.5 1450 40.8
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 5.3e-267 925.2 775 63.2
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 1.0e-257 894.4 488 91.0
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 2.7e-255 886.3 561 81.5
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.4e-248 864.0 617 74.9
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 2.5e-245 853.2 672 66.5
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 1.3e-244 850.9 737 61.6
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 2.5e-237 826.6 647 67.2
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.5e-234 817.4 575 71.3
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 5.0e-233 812.4 671 63.5
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 3.7e-220 769.6 580 67.6
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 3.8e-209 733.0 615 63.1
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 9.5e-200 701.8 1616 34.0
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 5.9e-194 682.6 1119 39.3
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 1.1e-187 661.8 630 58.1
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 6.6e-185 652.5 1711 30.3
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 8.1e-183 645.6 1026 41.2
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 3.7e-180 636.7 495 66.1
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 6.0e-154 549.7 898 41.1
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 7.1e-147 526.2 548 53.5
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 1.4e-142 511.9 585 49.4
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 3.1e-142 510.8 644 46.6
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 1.7e-132 478.4 681 43.9
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 5.7e-128 463.4 609 45.6
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 7.4e-128 463.0 495 52.3
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 1.8e-110 405.2 1456 27.3
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 3.6e-106 391.0 793 36.2
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 1.5e-104 385.6 410 52.4
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 2.2e-103 381.7 1595 26.1
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 4.0e-97 360.9 555 40.4
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 1.7e-84 318.9 334 54.8
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 2.9e-79 301.6 295 55.6
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 8.3e-79 300.1 244 61.9
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 4.1e-78 297.7 249 59.8
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 1.6e-77 295.8 304 52.3
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.6e-77 295.8 362 50.0
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 2.5e-75 288.5 271 59.0
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 1.3e-68 266.2 290 49.0
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 9.2e-62 243.4 298 47.7
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 1.7e-60 239.2 318 46.9
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 6.2e-58 230.7 299 44.8
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 8.4e-31 140.6 142 48.6
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 2.1e-29 136.0 86 82.6
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.3e-26 126.7 120 56.7
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 2.8e-26 125.6 74 85.1
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 5.8e-24 117.9 129 54.3
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 2.7e-21 109.0 503 23.1
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.7e-21 109.0 91 64.8
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 1.3e-18 100.1 60 76.7
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 1.3e-18 100.1 121 47.9
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 1.1e-17 97.1 60 76.7
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 1.4e-17 96.7 88 62.5
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 5.0e-15 88.2 76 56.6
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 2.5e-14 85.9 120 50.0
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 1.1e-11 77.0 70 62.9
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 6.9e-09 67.8 92 46.7


User provided reference genes

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