Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 0.0e+00 1277.3 599 100.0
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 0.0e+00 1141.7 578 93.3
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 2.0e-301 1038.5 565 87.6
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 5.0e-300 1033.9 609 82.1
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 6.7e-297 1023.5 609 81.4
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 6.1e-282 973.8 591 77.8
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 4.1e-278 961.1 610 75.6
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 6.7e-273 943.7 603 73.6
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 4.4e-272 941.0 615 73.8
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.5e-269 931.4 591 75.1
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 1.6e-266 922.5 614 72.3
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 2.1e-266 922.2 602 72.6
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 2.7e-266 921.8 605 72.9
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 3.6e-266 921.4 587 73.6
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 2.3e-265 918.7 608 71.9
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 5.2e-265 917.5 613 70.6
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 6.8e-265 917.1 587 73.9
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 8.8e-265 916.8 609 71.9
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 7.5e-264 913.7 615 72.0
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 1.3e-263 912.9 608 72.0
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 2.2e-263 912.1 600 72.5
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 2.8e-263 911.8 603 72.1
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 1.4e-262 909.4 606 71.6
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 1.8e-262 909.1 611 72.8
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 5.4e-262 907.5 625 70.4
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 5.4e-262 907.5 609 71.6
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 7.0e-262 907.1 603 71.6
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 1.2e-261 906.4 609 71.1
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.6e-261 906.0 622 70.1
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 2.7e-261 905.2 577 73.7
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 4.5e-261 904.4 608 70.9
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 1.0e-260 903.3 600 71.8
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 1.3e-260 902.9 610 71.3
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 3.8e-260 901.4 605 71.1
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 6.6e-260 900.6 603 71.3
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 1.1e-259 899.8 587 72.4
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 1.1e-259 899.8 601 71.7
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.9e-259 899.0 606 71.1
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 2.5e-259 898.7 604 70.0
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 3.3e-259 898.3 602 70.8
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 7.2e-259 897.1 601 71.4
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 2.1e-258 895.6 606 70.5
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 4.7e-258 894.4 593 71.7
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 8.0e-258 893.6 598 71.9
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.0e-257 891.7 601 70.4
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 3.0e-257 891.7 598 71.7
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.2e-256 889.8 579 72.0
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 1.5e-256 889.4 601 70.2
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 3.4e-256 888.3 596 70.1
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 4.4e-256 887.9 605 70.6
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 5.7e-256 887.5 605 70.9
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 7.5e-256 887.1 607 70.0
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 3.7e-255 884.8 579 72.4
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 6.3e-255 884.0 566 78.1
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 1.4e-254 882.9 605 70.4
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 3.1e-254 881.7 604 69.5
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 3.1e-254 881.7 588 71.6
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 1.1e-251 873.2 627 67.0
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 8.0e-250 867.1 611 68.9
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 1.2e-248 863.2 587 69.8
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 4.4e-248 861.3 588 69.9
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 1.3e-247 859.8 588 69.7
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 1.3e-247 859.8 588 69.7
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 1.4e-246 856.3 608 67.6
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 5.4e-246 854.4 587 68.8
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 1.6e-245 852.8 750 58.5
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 2.7e-245 852.0 610 67.0
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 3.5e-245 851.7 587 68.7
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 4.6e-245 851.3 609 67.2
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 4.6e-245 851.3 609 67.2
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 2.3e-244 849.0 817 54.1
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 7.3e-243 844.0 587 69.0
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 7.3e-243 844.0 587 69.2
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 7.3e-243 844.0 610 67.2
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 3.6e-242 841.6 587 68.5
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.1e-241 840.1 609 67.7
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 2.3e-241 839.0 605 67.6
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 6.8e-241 837.4 616 65.1
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 6.8e-241 837.4 573 69.3
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 8.9e-241 837.0 609 66.0
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 1.7e-239 832.8 564 71.6
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 2.9e-239 832.0 587 67.1
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 8.3e-239 830.5 710 58.9
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 1.1e-238 830.1 648 63.3
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 3.2e-238 828.6 591 68.5
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 4.3e-235 818.1 527 73.4
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 1.4e-233 813.1 595 67.1
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 2.3e-233 812.4 584 68.0
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 2.3e-233 812.4 500 76.4
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 1.5e-227 793.1 541 70.8
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 2.8e-226 788.9 551 68.6
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 6.2e-226 787.7 583 66.7
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 8.9e-225 783.9 638 61.3
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.5e-224 783.1 638 61.3
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 2.6e-224 782.3 535 70.7
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 6.6e-220 767.7 536 69.8
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 4.2e-214 748.4 520 68.3
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 3.1e-201 705.7 586 60.2
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.0e-196 690.6 596 58.7
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 4.2e-190 668.7 615 54.6
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 1.6e-186 656.8 585 55.2
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 2.9e-183 646.0 434 69.8
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 2.9e-183 646.0 467 66.0
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 5.9e-176 621.7 582 53.3
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 7.2e-174 614.8 359 78.0
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 1.0e-167 594.3 528 55.7
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 5.0e-167 592.0 585 51.5
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 8.8e-164 581.3 426 66.7
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 3.2e-150 536.2 410 64.1
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 1.7e-130 470.7 448 55.8
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 7.0e-129 465.3 352 66.5
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 8.1e-117 425.2 224 83.9
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 4.3e-110 402.9 409 52.3
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.3e-77 295.0 179 76.5
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 9.3e-73 278.9 166 75.9
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 2.8e-69 267.3 244 58.2
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 8.2e-61 239.2 130 83.1
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 5.9e-51 206.5 155 61.9
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 4.2e-49 200.3 160 57.5
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 9.7e-46 189.1 264 42.4
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 8.2e-45 186.0 100 84.0
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 2.5e-41 174.5 120 75.0
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 7.2e-41 172.9 121 63.6
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 5.4e-36 156.8 102 75.5
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.9e-34 151.0 132 58.3
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 1.2e-27 129.0 65 86.2
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.8e-24 117.9 82 70.7
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.0e-24 116.3 117 51.3
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 1.0e-23 115.9 77 71.4
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.2e-19 102.4 56 78.6
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.8e-19 99.8 78 61.5
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.7e-18 98.6 56 73.2
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.7e-18 98.6 56 73.2
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.3e-18 98.2 56 76.8
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.3e-18 98.2 56 76.8
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.1e-17 95.9 78 60.3
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 5.2e-15 87.0 65 66.2
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.8e-15 86.7 73 58.9
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.8e-15 86.7 73 58.9
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 6.4e-13 80.1 57 66.7
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.4e-12 77.0 46 71.7
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 2.5e-09 68.2 32 78.1
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 1.8e-07 62.0 249 24.5
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 2.6e-06 58.2 73 32.9
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 4.4e-06 57.4 30 83.3
Peaxi162Scf00415g00415 Petunia axillaris HOM05D004940 ORTHO05D022117 7.5e-06 56.6 44 61.4


User provided reference genes

Program Settings