Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.3e-174 616.3 316 100.0
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.6e-76 290.4 320 52.2
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 1.3e-73 280.8 320 50.6
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 2.9e-73 279.6 318 50.3
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 1.3e-68 264.2 318 48.7
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.6e-68 263.8 184 77.2
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 8.1e-68 261.5 321 47.7
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 1.4e-67 260.8 269 52.0
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 6.9e-67 258.5 269 53.5
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 7.6e-66 255.0 268 53.7
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 2.9e-65 253.1 268 50.4
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 6.5e-65 251.9 277 50.5
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 8.4e-65 251.5 316 48.1
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.1e-64 251.1 269 51.3
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.9e-64 250.4 312 47.8
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.5e-64 250.0 312 47.4
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 5.5e-64 248.8 269 51.3
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.6e-63 247.3 264 51.1
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.1e-63 246.9 307 47.2
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 4.6e-63 245.7 287 48.8
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.3e-62 244.2 314 46.5
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 2.3e-62 243.4 317 44.5
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 3.0e-62 243.0 268 49.3
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 3.0e-62 243.0 263 50.6
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.9e-62 242.7 307 47.6
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 5.1e-62 242.3 307 47.2
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.7e-62 241.9 307 47.2
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 8.7e-62 241.5 322 45.7
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 8.7e-62 241.5 267 50.9
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 1.5e-61 240.7 291 48.1
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 1.9e-61 240.4 269 49.8
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 3.3e-61 239.6 323 44.9
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 5.7e-61 238.8 264 51.1
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 9.6e-61 238.0 289 45.3
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 1.6e-60 237.3 264 49.2
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 2.1e-60 236.9 273 48.7
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 2.1e-60 236.9 265 48.3
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 2.1e-60 236.9 270 48.9
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 2.1e-60 236.9 264 49.6
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.8e-60 236.5 267 50.2
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 2.8e-60 236.5 329 44.1
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.7e-60 236.1 288 44.4
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 6.2e-60 235.3 291 47.8
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 8.2e-60 235.0 326 44.8
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 8.2e-60 235.0 272 45.6
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 8.2e-60 235.0 265 49.4
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 8.2e-60 235.0 288 48.3
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 1.4e-59 234.2 289 46.7
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 1.8e-59 233.8 268 50.4
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.8e-59 233.8 309 46.0
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 3.1e-59 233.0 288 46.9
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 4.1e-59 232.6 267 49.8
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 5.3e-59 232.3 269 49.8
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 1.2e-58 231.1 269 46.5
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 1.5e-58 230.7 269 46.1
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.0e-58 230.3 293 45.4
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 2.0e-58 230.3 307 45.9
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 2.0e-58 230.3 263 47.9
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 2.6e-58 229.9 277 44.4
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 4.5e-58 229.2 288 46.5
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 5.8e-58 228.8 312 41.7
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 1.3e-57 227.6 264 49.2
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 1.7e-57 227.3 304 45.4
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 2.9e-57 226.5 266 47.7
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 3.8e-57 226.1 267 48.7
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 5.0e-57 225.7 353 39.4
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 8.4e-57 224.9 263 47.9
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 1.9e-56 223.8 301 44.2
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 2.5e-56 223.4 266 50.0
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.2e-56 223.0 300 44.3
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 5.5e-56 222.2 274 46.4
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 9.3e-56 221.5 264 47.3
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.2e-55 221.1 264 47.3
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 1.2e-55 221.1 301 44.9
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 3.5e-55 219.5 264 46.6
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 6.1e-55 218.8 266 46.2
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 7.9e-55 218.4 266 46.6
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.0e-54 218.0 266 47.4
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 1.0e-54 218.0 268 45.5
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 1.0e-54 218.0 265 46.0
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 1.3e-54 217.6 266 45.1
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 1.8e-54 217.2 266 45.9
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.8e-54 217.2 264 45.1
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 1.8e-54 217.2 306 41.8
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 1.8e-54 217.2 291 43.6
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 2.3e-54 216.9 266 45.5
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 3.0e-54 216.5 264 45.8
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 3.0e-54 216.5 267 44.9
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 3.9e-54 216.1 263 44.1
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 8.7e-54 214.9 268 45.1
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 8.7e-54 214.9 266 45.1
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.5e-53 214.2 268 46.6
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.9e-53 213.8 314 43.3
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 1.9e-53 213.8 264 45.5
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 2.5e-53 213.4 269 46.8
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 7.4e-53 211.8 263 45.2
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 9.7e-53 211.5 268 44.4
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 9.7e-53 211.5 265 47.2
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 2.8e-52 209.9 266 44.7
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 2.8e-52 209.9 272 48.9
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 3.7e-52 209.5 266 47.4
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 4.8e-52 209.1 268 46.3
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 6.3e-52 208.8 266 44.7
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 1.4e-51 207.6 268 43.7
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 2.4e-51 206.8 266 44.0
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 2.4e-51 206.8 252 46.0
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 2.4e-51 206.8 266 43.6
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 9.0e-51 204.9 289 42.6
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 1.2e-50 204.5 264 45.1
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 1.3e-49 201.1 265 44.5
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 1.7e-49 200.7 265 44.9
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 1.7e-49 200.7 267 45.3
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 2.9e-49 199.9 233 49.8
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 2.9e-49 199.9 249 46.2
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.9e-48 197.2 271 45.0
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 2.5e-48 196.8 294 39.8
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.7e-47 193.4 228 48.7
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 1.8e-46 190.7 182 54.9
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 5.1e-46 189.1 311 40.8
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 6.7e-46 188.7 233 44.6
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 9.7e-45 184.9 262 44.7
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 1.3e-44 184.5 265 44.5
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 6.3e-44 182.2 270 41.9
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.9e-41 173.3 290 39.7
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 3.8e-41 172.9 265 39.2
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 6.5e-41 172.2 276 39.5
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 1.1e-40 171.4 180 52.2
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 4.2e-40 169.5 180 48.3
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.7e-39 166.8 95 90.5
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 6.1e-39 165.6 182 50.5
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 6.1e-39 165.6 181 50.3
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 1.4e-38 164.5 256 41.0
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 4.4e-37 159.5 179 49.2
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.0e-33 148.3 206 45.1
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 1.5e-32 144.4 273 35.9
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 9.4e-32 141.7 158 48.1
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 2.0e-29 134.0 136 49.3
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 7.0e-27 125.6 89 65.2
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 1.2e-26 124.8 239 35.1
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 4.7e-23 112.8 139 51.8
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 8.0e-23 112.1 201 36.3
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 2.8e-20 103.6 201 36.8
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.3e-20 102.1 120 49.2
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 4.1e-19 99.8 106 50.0
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 5.4e-19 99.4 85 61.2
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 1.5e-16 91.3 249 32.1
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.8e-14 84.3 63 68.3
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 8.3e-12 75.5 63 57.1
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 3.5e-10 70.1 275 27.6
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 1.2e-07 61.6 256 27.3


User provided reference genes

Program Settings