Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.1e-81 307.0 208 100.0
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 3.6e-80 302.0 208 98.1
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 4.2e-65 251.9 207 84.5
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 1.6e-64 250.0 207 86.0
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 3.4e-62 242.3 207 85.0
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 5.2e-55 218.4 205 66.8
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 6.4e-45 184.9 200 73.5
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 2.1e-40 169.9 203 70.9
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 3.6e-40 169.1 206 68.4
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 1.1e-39 167.5 203 70.9
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 3.1e-39 166.0 199 69.8
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 5.2e-39 165.2 200 71.5
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.2e-38 164.1 202 68.8
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 2.6e-38 162.9 205 67.3
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 4.4e-38 162.2 208 67.3
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 9.9e-38 161.0 205 55.1
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.1e-36 157.5 203 66.5
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 1.4e-36 157.1 205 66.8
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.9e-36 156.8 202 66.8
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 1.9e-36 156.8 202 68.8
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 1.9e-36 156.8 203 67.0
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 2.4e-36 156.4 203 64.5
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 2.4e-36 156.4 200 68.0
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 3.2e-36 156.0 209 64.1
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 4.1e-36 155.6 210 63.8
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 5.4e-36 155.2 205 56.1
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 7.1e-36 154.8 203 63.1
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 7.1e-36 154.8 203 57.1
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 7.1e-36 154.8 203 67.0
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 9.2e-36 154.5 202 66.3
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 9.2e-36 154.5 205 64.9
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 1.2e-35 154.1 205 62.9
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 1.2e-35 154.1 199 61.8
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.6e-35 153.7 204 65.2
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 2.1e-35 153.3 217 64.5
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 6.0e-35 151.8 191 69.6
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 7.8e-35 151.4 205 59.0
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 7.8e-35 151.4 205 59.0
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 7.8e-35 151.4 209 64.6
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 1.7e-34 150.2 210 62.4
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 3.0e-34 149.4 205 65.4
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 3.0e-34 149.4 191 68.6
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 3.0e-34 149.4 191 68.6
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 5.1e-34 148.7 203 64.5
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 6.6e-34 148.3 202 66.8
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 6.6e-34 148.3 202 66.8
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 6.6e-34 148.3 203 66.5
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 1.1e-33 147.5 204 63.7
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 1.1e-33 147.5 201 65.7
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.5e-33 147.1 203 66.5
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.9e-33 146.7 191 68.1
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.9e-33 146.7 200 67.0
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 1.9e-33 146.7 205 66.3
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 2.5e-33 146.4 204 60.8
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.5e-33 146.4 191 68.1
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 2.5e-33 146.4 204 64.2
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 4.3e-33 145.6 191 68.1
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.3e-33 145.6 191 68.1
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 5.6e-33 145.2 201 64.7
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 7.3e-33 144.8 200 66.0
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 9.5e-33 144.4 211 60.2
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 9.5e-33 144.4 211 60.2
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 1.2e-32 144.1 202 67.3
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.6e-32 143.7 205 58.0
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 2.1e-32 143.3 198 65.2
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 2.8e-32 142.9 202 67.3
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 2.8e-32 142.9 200 62.5
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 2.8e-32 142.9 205 63.4
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 4.7e-32 142.1 200 66.0
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 4.7e-32 142.1 200 66.0
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 4.7e-32 142.1 201 58.2
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 4.7e-32 142.1 199 65.8
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 4.7e-32 142.1 188 68.1
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 4.7e-32 142.1 203 63.1
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 6.2e-32 141.7 208 41.3
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 6.2e-32 141.7 208 58.7
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 6.2e-32 141.7 205 65.9
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 8.1e-32 141.4 206 62.6
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 1.4e-31 140.6 208 57.7
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 1.4e-31 140.6 195 65.6
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 1.8e-31 140.2 201 56.7
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 1.8e-31 140.2 206 62.1
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 2.4e-31 139.8 208 40.9
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 2.4e-31 139.8 204 62.7
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 2.4e-31 139.8 232 59.1
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 4.0e-31 139.0 203 64.5
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 8.9e-31 137.9 198 64.1
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 8.9e-31 137.9 198 64.1
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 1.2e-30 137.5 195 61.5
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 2.0e-30 136.7 207 57.5
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 2.6e-30 136.3 201 48.8
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 2.6e-30 136.3 203 61.6
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 3.4e-30 136.0 201 39.8
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 3.4e-30 136.0 201 39.8
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 3.4e-30 136.0 204 57.4
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 4.4e-30 135.6 188 67.0
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 5.8e-30 135.2 142 66.9
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 9.9e-30 134.4 204 62.7
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 9.9e-30 134.4 203 62.1
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 1.7e-29 133.7 183 51.9
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 2.2e-29 133.3 200 51.5
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 2.9e-29 132.9 183 67.2
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 1.9e-28 130.2 200 55.5
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 2.4e-28 129.8 200 62.5
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 4.2e-28 129.0 196 39.3
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 9.2e-28 127.9 230 56.1
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 9.2e-28 127.9 193 63.2
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 1.3e-26 124.0 254 41.7
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 3.9e-26 122.5 142 64.8
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 5.1e-26 122.1 162 69.8
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 2.4e-23 113.2 210 57.1
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 2.0e-22 110.2 138 75.4
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 5.8e-22 108.6 201 58.7
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 1.7e-21 107.1 202 35.1
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 3.2e-20 102.8 227 41.4
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 7.1e-20 101.7 201 45.3
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 6.0e-19 98.6 155 59.4
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 6.0e-19 98.6 155 59.4
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 6.0e-19 98.6 155 59.4
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 6.0e-19 98.6 155 59.4
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 6.0e-19 98.6 215 42.3
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 7.8e-19 98.2 162 61.1
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 7.8e-19 98.2 162 61.1
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 1.0e-18 97.8 202 36.6
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 1.0e-18 97.8 202 36.6
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 5.1e-18 95.5 145 49.0
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 5.1e-18 95.5 188 53.7
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 6.6e-18 95.1 202 36.1
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 6.6e-18 95.1 141 66.7
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 7.3e-17 91.7 202 35.6
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 3.6e-16 89.4 138 65.2
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.8e-16 89.0 144 54.9
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 5.3e-15 85.5 146 63.7
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.2e-14 84.3 145 64.8
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 3.4e-14 82.8 106 47.2
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 1.7e-13 80.5 80 76.2
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.8e-13 79.3 86 68.6
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.2e-12 75.9 137 40.9
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 2.1e-11 73.6 117 59.0
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 4.6e-11 72.4 181 52.5
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 6.0e-11 72.0 89 44.9
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 1.8e-10 70.5 168 32.1
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 4.8e-08 62.4 61 47.5
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 4.0e-07 59.3 84 42.9
CBR_g37530 Chara braunii HOM05D002729 ORTHO05D003163 2.6e-06 56.6 61 47.5
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 7.6e-06 55.1 87 42.5


User provided reference genes

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