Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.1e-27 125.9 66 100.0
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.5e-24 115.5 64 89.1
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 5.7e-24 113.6 66 87.9
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 5.7e-24 113.6 66 87.9
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 5.7e-24 113.6 66 87.9
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 7.5e-24 113.2 66 87.9
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 9.8e-24 112.8 66 86.4
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 9.8e-24 112.8 65 87.7
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 1.3e-23 112.5 66 86.4
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 1.7e-23 112.1 66 87.9
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 2.2e-23 111.7 63 88.9
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 2.2e-23 111.7 66 87.9
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 2.2e-23 111.7 66 87.9
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 2.2e-23 111.7 66 87.9
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 2.2e-23 111.7 63 87.3
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 2.8e-23 111.3 66 86.4
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 3.7e-23 110.9 66 86.4
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 4.8e-23 110.5 65 87.7
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 4.8e-23 110.5 66 87.9
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 6.3e-23 110.2 66 86.4
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 6.3e-23 110.2 66 86.4
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 8.3e-23 109.8 66 86.4
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 8.3e-23 109.8 66 86.4
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 8.3e-23 109.8 66 86.4
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 8.3e-23 109.8 65 86.2
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 8.3e-23 109.8 66 86.4
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 8.3e-23 109.8 66 86.4
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 8.3e-23 109.8 66 86.4
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 8.3e-23 109.8 62 87.1
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.1e-22 109.4 66 83.3
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 1.1e-22 109.4 66 84.8
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 1.1e-22 109.4 65 86.2
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.1e-22 109.4 66 84.8
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 1.4e-22 109.0 66 84.8
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 1.8e-22 108.6 66 84.8
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 1.8e-22 108.6 66 84.8
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 1.8e-22 108.6 66 84.8
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 2.4e-22 108.2 65 84.6
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 3.1e-22 107.8 66 84.8
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 4.1e-22 107.5 66 83.3
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 5.4e-22 107.1 66 86.4
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 5.4e-22 107.1 66 83.3
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 5.4e-22 107.1 66 83.3
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 5.4e-22 107.1 66 84.8
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 7.0e-22 106.7 65 84.6
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 7.0e-22 106.7 65 84.6
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 7.0e-22 106.7 66 83.3
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 7.0e-22 106.7 65 83.1
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 7.0e-22 106.7 66 84.8
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 7.0e-22 106.7 65 83.1
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 9.1e-22 106.3 66 83.3
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 9.1e-22 106.3 66 83.3
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.2e-21 105.9 66 81.8
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 1.2e-21 105.9 66 81.8
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.2e-21 105.9 66 81.8
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.2e-21 105.9 66 81.8
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.2e-21 105.9 66 83.3
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.6e-21 105.5 66 80.3
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 1.6e-21 105.5 63 82.5
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 2.0e-21 105.1 65 84.6
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 2.7e-21 104.8 66 80.3
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 2.7e-21 104.8 66 81.8
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 2.7e-21 104.8 65 81.5
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 2.7e-21 104.8 66 81.8
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 3.5e-21 104.4 65 83.1
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 3.5e-21 104.4 62 83.9
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 3.5e-21 104.4 66 80.3
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.5e-21 104.4 66 80.3
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.5e-21 104.4 66 80.3
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 4.5e-21 104.0 66 78.8
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 4.5e-21 104.0 66 78.8
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 4.5e-21 104.0 66 81.8
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 4.5e-21 104.0 65 83.1
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 5.9e-21 103.6 65 83.1
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 5.9e-21 103.6 66 81.8
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 5.9e-21 103.6 65 83.1
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 7.7e-21 103.2 66 77.3
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 7.7e-21 103.2 66 78.8
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 7.7e-21 103.2 66 78.8
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 7.7e-21 103.2 66 78.8
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.0e-20 102.8 66 83.3
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 1.0e-20 102.8 63 82.5
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 1.3e-20 102.4 66 78.8
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.3e-20 102.4 66 81.8
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.7e-20 102.1 66 77.3
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.3e-20 101.7 64 82.8
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 2.9e-20 101.3 65 81.5
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 2.9e-20 101.3 65 81.5
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.0e-20 100.5 64 81.2
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 5.0e-20 100.5 66 75.8
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 8.6e-20 99.8 65 76.9
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 1.1e-19 99.4 65 80.0
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 1.5e-19 99.0 63 76.2
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 1.5e-19 99.0 63 76.2
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 1.5e-19 99.0 63 76.2
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 1.5e-19 99.0 63 76.2
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 1.5e-19 99.0 63 76.2
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 1.5e-19 99.0 63 76.2
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 1.9e-19 98.6 65 75.4
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 1.9e-19 98.6 63 76.2
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 2.5e-19 98.2 63 76.2
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 2.5e-19 98.2 63 76.2
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 2.5e-19 98.2 63 76.2
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.5e-19 98.2 66 74.2
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 3.3e-19 97.8 65 75.4
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 4.2e-19 97.4 63 77.8
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 7.2e-19 96.7 63 74.6
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 7.2e-19 96.7 66 74.2
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 7.2e-19 96.7 66 74.2
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 7.2e-19 96.7 63 74.6
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 7.2e-19 96.7 63 76.2
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 9.5e-19 96.3 66 75.8
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 9.5e-19 96.3 66 75.8
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 1.2e-18 95.9 61 73.8
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.6e-18 95.5 66 74.2
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 1.6e-18 95.5 66 74.2
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.6e-18 95.5 66 74.2
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 2.1e-18 95.1 63 73.0
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 2.1e-18 95.1 63 73.0
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 2.1e-18 95.1 63 73.0
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 2.1e-18 95.1 63 73.0
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 2.1e-18 95.1 63 73.0
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 2.1e-18 95.1 53 83.0
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 2.1e-18 95.1 66 74.2
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 2.8e-18 94.7 65 73.8
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 4.7e-18 94.0 63 73.0
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 8.0e-18 93.2 65 73.8
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 8.0e-18 93.2 66 72.7
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 8.0e-18 93.2 66 72.7
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 1.0e-17 92.8 66 72.7
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 1.0e-17 92.8 61 73.8
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 1.0e-17 92.8 61 73.8
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 1.0e-17 92.8 66 74.2
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.0e-17 92.8 66 72.7
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.0e-17 92.8 49 95.9
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 3.0e-17 91.3 65 72.3
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 6.8e-17 90.1 94 58.5
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 2.6e-16 88.2 56 71.4
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 3.4e-16 87.8 90 55.6
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 5.4e-14 80.5 65 64.6
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 1.2e-13 79.3 66 66.7
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.9e-13 77.0 41 82.9
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 3.3e-11 71.2 59 54.2
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 5.6e-11 70.5 39 82.1
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 8.3e-07 56.6 38 76.3


User provided reference genes

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