Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002366g0060 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.9e-68 262.3 129 100.0
Hma1.2p1_0832F.1_g225610 Hydrangea macrophylla HOM05D002996 ORTHO05D003536 4.7e-46 188.0 107 85.0
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.3e-45 185.7 102 92.2
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 3.0e-45 185.3 102 92.2
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 4.0e-45 184.9 102 91.2
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 6.7e-45 184.1 102 91.2
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 2.0e-44 182.6 100 93.0
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 2.6e-44 182.2 102 89.2
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.3e-44 181.8 102 90.2
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 4.4e-44 181.4 102 88.2
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 4.4e-44 181.4 102 89.2
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 5.7e-44 181.0 100 92.0
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 7.5e-44 180.6 102 89.2
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 9.7e-44 180.3 102 90.2
Actinidia17659 Actinidia chinensis HOM05D002996 ORTHO05D003536 1.3e-43 179.9 102 89.2
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 1.7e-43 179.5 102 89.2
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 2.8e-43 178.7 102 90.2
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 2.8e-43 178.7 102 87.3
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 2.8e-43 178.7 102 87.3
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 3.7e-43 178.3 102 88.2
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 3.7e-43 178.3 102 88.2
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 6.3e-43 177.6 102 82.4
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 6.3e-43 177.6 102 89.2
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 6.3e-43 177.6 102 86.3
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 6.3e-43 177.6 102 88.2
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 6.3e-43 177.6 102 88.2
PGSC0003DMG402030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 6.3e-43 177.6 102 88.2
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 8.2e-43 177.2 101 88.1
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 8.2e-43 177.2 102 85.3
COL.COLO4_15723 Corchorus olitorius HOM05D002996 ORTHO05D003536 8.2e-43 177.2 102 87.3
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 8.2e-43 177.2 101 88.1
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 8.2e-43 177.2 102 86.3
CsaV3_1G027780 Cucumis sativus L. HOM05D002996 ORTHO05D003536 1.1e-42 176.8 101 87.1
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 1.1e-42 176.8 101 87.1
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 1.8e-42 176.0 100 83.0
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 1.8e-42 176.0 100 83.0
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 1.8e-42 176.0 102 87.3
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.4e-42 175.6 102 86.3
CiPaw.03G068900 Carya illinoinensis HOM05D002996 ORTHO05D003536 2.4e-42 175.6 102 86.3
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 2.4e-42 175.6 102 88.2
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 3.1e-42 175.3 102 86.3
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 3.1e-42 175.3 102 86.3
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 3.1e-42 175.3 102 86.3
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 4.1e-42 174.9 102 83.3
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 4.1e-42 174.9 102 83.3
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 4.1e-42 174.9 101 86.1
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 4.1e-42 174.9 102 86.3
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 4.1e-42 174.9 102 86.3
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 4.1e-42 174.9 120 75.8
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 5.3e-42 174.5 102 87.3
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 5.3e-42 174.5 102 85.3
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 7.0e-42 174.1 102 83.3
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 7.0e-42 174.1 101 87.1
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 9.1e-42 173.7 112 79.5
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 9.1e-42 173.7 102 83.3
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 1.2e-41 173.3 102 83.3
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 1.2e-41 173.3 102 82.4
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 1.2e-41 173.3 102 81.4
Cpa.g.c28186.1 Carica papaya HOM05D002996 ORTHO05D003536 1.2e-41 173.3 102 86.3
DCAR_010738 Daucus carota HOM05D002996 ORTHO05D003536 1.2e-41 173.3 102 85.3
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 1.6e-41 172.9 101 85.1
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 2.0e-41 172.6 102 87.3
Dinv19011 Davidia involucrata HOM05D002996 ORTHO05D003536 2.0e-41 172.6 102 87.3
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 2.0e-41 172.6 100 87.0
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 2.7e-41 172.2 102 81.4
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 2.7e-41 172.2 102 81.4
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 2.7e-41 172.2 102 81.4
CSS0044512 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.7e-41 172.2 102 84.3
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 2.7e-41 172.2 102 85.3
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 2.7e-41 172.2 100 84.0
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 4.5e-41 171.4 103 84.5
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 4.5e-41 171.4 102 83.3
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 4.5e-41 171.4 102 81.4
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 4.5e-41 171.4 102 81.4
MBI16_g14302_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 4.5e-41 171.4 102 85.3
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 5.9e-41 171.0 102 87.3
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 5.9e-41 171.0 102 85.3
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 5.9e-41 171.0 103 84.5
FAN08G1319 Fragaria x ananassa HOM05D002996 ORTHO05D003536 5.9e-41 171.0 103 84.5
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 5.9e-41 171.0 103 84.5
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 7.7e-41 170.6 102 81.4
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.0e-40 170.2 102 86.3
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.0e-40 170.2 102 86.3
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 1.0e-40 170.2 102 86.3
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 1.0e-40 170.2 102 84.3
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 1.0e-40 170.2 101 84.2
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 1.0e-40 170.2 102 84.3
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 1.7e-40 169.5 102 86.3
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 1.7e-40 169.5 102 83.3
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 2.2e-40 169.1 102 85.3
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 2.2e-40 169.1 102 80.4
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 2.2e-40 169.1 102 80.4
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 2.9e-40 168.7 102 85.3
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 2.9e-40 168.7 100 84.0
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 5.0e-40 167.9 101 84.2
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 6.5e-40 167.5 102 82.4
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 6.5e-40 167.5 102 81.4
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 6.5e-40 167.5 100 83.0
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 8.5e-40 167.2 100 82.0
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 8.5e-40 167.2 100 84.0
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 1.1e-39 166.8 99 81.8
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 2.5e-39 165.6 100 82.0
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 7.2e-39 164.1 102 80.4
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 7.2e-39 164.1 102 80.4
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 9.4e-39 163.7 102 82.4
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 1.2e-38 163.3 99 81.8
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 2.1e-38 162.5 100 83.0
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 2.1e-38 162.5 100 83.0
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 2.1e-38 162.5 102 81.4
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 6.1e-38 161.0 91 85.7
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 6.1e-38 161.0 91 85.7
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 6.1e-38 161.0 100 82.0
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 6.1e-38 161.0 99 84.8
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 8.0e-38 160.6 91 84.6
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 8.0e-38 160.6 100 81.0
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 8.0e-38 160.6 100 82.0
SEGI_40820 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 2.3e-37 159.1 102 79.4
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 6.8e-37 157.5 100 80.0
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 8.8e-37 157.1 101 74.3
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 8.8e-37 157.1 96 82.3
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 2.6e-36 155.6 100 81.0
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 2.6e-36 155.6 100 81.0
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 3.4e-36 155.2 88 88.6
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 9.8e-36 153.7 99 76.8
Nitab4.5_0000465g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.7e-35 152.9 77 97.4
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 2.2e-35 152.5 100 74.0
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 2.8e-35 152.1 89 83.1
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 3.7e-35 151.8 102 73.5
CDE11G1125 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 9.1e-34 147.1 94 79.8
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 1.2e-33 146.7 102 73.5
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 4.5e-33 144.8 100 71.0
vmacro05508 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 4.5e-33 144.8 91 79.1
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 7.7e-33 144.1 83 83.1
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 3.8e-32 141.7 82 80.5
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 8.6e-32 140.6 89 75.3
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 8.6e-32 140.6 102 71.6
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 3.2e-31 138.7 96 72.9
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 4.2e-31 138.3 96 71.9
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 1.6e-30 136.3 83 79.5
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 2.8e-30 135.6 87 81.6
Lj2C435G4 Lonicera japonica HOM05D002996 ORTHO05D003536 8.0e-30 134.0 83 85.5
GSVIVG01037949001 Vitis vinifera HOM05D002996 ORTHO05D003536 8.8e-29 130.6 101 69.3
PSO407G0207 Papaver somniferum HOM05D002996 ORTHO05D003536 4.4e-28 128.3 83 71.1
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 7.5e-28 127.5 72 88.9
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.8e-26 122.9 90 66.7
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 5.4e-26 121.3 80 67.5
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 2.7e-25 119.0 82 73.2
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 1.7e-24 116.3 83 66.3
vmacro05504 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 4.3e-23 111.7 78 71.8
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.8e-21 106.3 57 89.5
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 3.0e-21 105.5 77 71.4
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 8.9e-21 104.0 57 87.7
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 2.0e-20 102.8 78 61.5
vmacro05511 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 9.8e-20 100.5 156 42.9
CDE10G1224 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 4.1e-18 95.1 51 86.3
Manes.04G143783 Manihot esculenta HOM05D002996 ORTHO05D003536 3.0e-16 89.0 74 66.2
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 3.3e-15 85.5 101 42.6
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 2.3e-13 79.3 91 52.7
PGSC0003DMG400014175 Solanum tuberosum HOM05D002996 ORTHO05D003536 2.2e-11 72.8 46 71.7
Solyc01g056910.1 Solanum lycopersicum HOM05D002996 ORTHO05D003536 7.0e-10 67.8 42 76.2


User provided reference genes

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