Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 3.0e-64 248.4 132 100.0
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 5.1e-56 221.1 150 82.7
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.3e-51 206.5 150 79.3
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 7.9e-49 197.2 150 76.0
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 3.3e-31 138.7 92 82.6
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 1.3e-30 136.7 123 67.5
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 2.4e-29 132.5 123 65.0
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 9.1e-29 130.6 125 64.8
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 1.1e-21 107.1 141 49.6
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 4.5e-20 101.7 142 47.9
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.7e-19 99.8 142 47.2
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 2.2e-19 99.4 142 48.6
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 1.1e-18 97.1 140 46.4
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 1.9e-18 96.3 126 50.8
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 2.5e-18 95.9 132 47.0
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.2e-18 95.5 125 51.2
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 7.2e-18 94.4 125 49.6
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 9.4e-18 94.0 150 46.7
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 9.4e-18 94.0 126 48.4
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 1.6e-17 93.2 128 49.2
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 2.1e-17 92.8 125 49.6
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.7e-17 92.4 125 50.4
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 3.6e-17 92.0 125 48.0
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 3.6e-17 92.0 126 45.2
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 6.1e-17 91.3 135 45.2
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 6.1e-17 91.3 124 49.2
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 1.0e-16 90.5 126 45.2
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 1.4e-16 90.1 132 47.0
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 3.9e-16 88.6 131 45.0
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 8.8e-16 87.4 126 46.0
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 2.0e-15 86.3 124 44.4
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 2.6e-15 85.9 118 46.6
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 3.3e-15 85.5 139 42.4
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 5.7e-15 84.7 94 53.2
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 5.7e-15 84.7 125 45.6
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 7.4e-15 84.3 95 52.6
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 7.4e-15 84.3 92 53.3
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 9.7e-15 84.0 131 43.5
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 1.7e-14 83.2 132 45.5
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 1.7e-14 83.2 121 44.6
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 1.7e-14 83.2 135 41.5
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 2.8e-14 82.4 123 45.5
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 4.8e-14 81.6 125 44.8
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 4.8e-14 81.6 123 43.9
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 8.2e-14 80.9 93 55.9
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 1.1e-13 80.5 129 42.6
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 1.4e-13 80.1 126 42.9
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 1.4e-13 80.1 135 42.2
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 4.1e-13 78.6 125 44.0
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 4.1e-13 78.6 124 44.4
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 4.1e-13 78.6 127 42.5
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 7.0e-13 77.8 124 46.0
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 9.1e-13 77.4 124 46.0
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 9.1e-13 77.4 91 52.7
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 1.2e-12 77.0 88 53.4
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 1.6e-12 76.6 130 41.5
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 1.6e-12 76.6 126 40.5
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 2.0e-12 76.3 92 45.7
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 2.0e-12 76.3 121 42.1
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 4.5e-12 75.1 130 42.3
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 5.9e-12 74.7 133 44.4
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 1.0e-11 73.9 124 43.5
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.3e-11 73.6 124 41.9
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 1.7e-11 73.2 123 42.3
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 8.5e-11 70.9 129 38.8
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 8.5e-11 70.9 97 45.4
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.1e-10 70.5 124 41.9
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.5e-10 70.1 122 41.0
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.5e-10 69.3 124 42.7
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 2.5e-10 69.3 124 41.1
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 7.2e-10 67.8 122 40.2
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 2.7e-09 65.9 124 38.7
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.0e-08 63.9 125 38.4
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.4e-08 63.5 125 39.2
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 2.3e-08 62.8 131 39.7
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 5.2e-08 61.6 138 33.3
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 8.8e-08 60.8 129 36.4
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 1.2e-07 60.5 118 37.3
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 1.5e-07 60.1 123 40.7
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 2.6e-07 59.3 125 36.8
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 3.3e-07 58.9 134 36.6
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 3.3e-07 58.9 134 36.6
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 3.3e-07 58.9 134 36.6
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 4.4e-07 58.5 128 39.8
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 5.7e-07 58.2 124 36.3
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 5.7e-07 58.2 126 37.3
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 9.7e-07 57.4 142 35.2
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 3.7e-06 55.5 127 37.8
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 4.8e-06 55.1 130 35.4
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 8.2e-06 54.3 64 48.4


User provided reference genes

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