Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 5.7e-164 580.9 299 100.0
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.1e-93 347.4 281 70.1
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.0e-83 314.3 277 66.4
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.4e-82 310.5 287 63.8
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 9.4e-82 307.8 273 65.9
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 1.5e-66 257.3 198 71.2
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 5.5e-66 255.4 201 71.1
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 1.0e-64 251.1 201 68.7
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 4.0e-64 249.2 200 67.5
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 1.5e-63 247.3 202 65.8
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 4.8e-62 242.3 200 66.5
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 4.8e-62 242.3 198 67.2
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 6.3e-62 241.9 288 51.4
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 8.2e-62 241.5 201 66.2
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.1e-61 241.1 205 64.9
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 7.0e-61 238.4 206 62.6
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 4.5e-60 235.7 203 64.5
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 2.2e-59 233.4 198 64.6
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 2.9e-59 233.0 204 61.8
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 2.9e-59 233.0 251 55.4
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 2.9e-59 233.0 235 59.6
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 8.5e-59 231.5 198 63.6
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.5e-58 230.7 200 63.0
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 9.4e-58 228.0 199 64.3
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 3.6e-57 226.1 197 65.5
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 4.7e-57 225.7 246 55.3
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 3.0e-56 223.0 197 62.4
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 8.8e-56 221.5 194 64.4
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.5e-55 220.7 237 56.5
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 2.0e-55 220.3 223 56.1
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 4.4e-55 219.2 201 61.2
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 4.4e-55 219.2 201 61.7
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 5.7e-55 218.8 201 62.2
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 5.7e-55 218.8 207 60.4
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.7e-54 217.2 198 61.6
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.7e-54 217.2 204 60.8
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.8e-54 216.5 197 59.9
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.8e-54 216.5 216 57.4
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 3.7e-54 216.1 197 60.4
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.7e-54 216.1 197 60.4
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 3.7e-54 216.1 199 60.8
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 4.8e-54 215.7 209 58.4
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 6.3e-54 215.3 205 60.5
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 6.3e-54 215.3 201 58.7
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 1.1e-53 214.5 200 62.0
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.8e-53 213.8 197 59.9
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 1.8e-53 213.8 205 60.0
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.8e-53 213.8 195 60.5
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 4.1e-53 212.6 200 59.0
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 4.1e-53 212.6 200 59.0
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 5.4e-53 212.2 207 59.4
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 7.0e-53 211.8 202 60.4
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 9.1e-53 211.5 228 56.1
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.2e-52 211.1 210 59.0
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.2e-52 211.1 199 60.8
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.7e-52 209.9 211 59.2
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 3.5e-52 209.5 224 56.2
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 3.5e-52 209.5 197 59.4
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 3.5e-52 209.5 197 59.4
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 3.5e-52 209.5 200 60.0
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.5e-52 209.1 197 57.9
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.5e-52 209.1 223 57.0
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 5.9e-52 208.8 207 59.4
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 7.7e-52 208.4 198 58.1
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.3e-51 207.6 199 57.3
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.7e-51 207.2 193 58.0
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.7e-51 207.2 225 53.8
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.7e-51 207.2 200 58.5
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 2.9e-51 206.5 205 59.0
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 2.9e-51 206.5 217 55.3
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 6.6e-51 205.3 209 59.3
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.1e-50 204.5 212 56.1
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.9e-50 203.8 200 57.0
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 1.9e-50 203.8 200 57.0
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.9e-50 203.8 212 55.7
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.9e-50 203.8 212 55.7
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.9e-50 203.8 212 55.7
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 2.5e-50 203.4 209 59.8
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.5e-50 203.4 198 59.1
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.5e-50 203.4 212 55.7
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.2e-49 201.1 213 54.5
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 2.1e-49 200.3 206 57.3
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 2.8e-49 199.9 204 56.4
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 3.6e-49 199.5 204 56.4
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 8.0e-49 198.4 198 57.1
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.0e-48 198.0 196 58.2
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.0e-48 198.0 208 57.2
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 1.4e-48 197.6 202 57.9
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.8e-48 197.2 199 57.3
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.8e-48 197.2 197 58.4
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.8e-48 197.2 199 57.3
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.8e-48 197.2 189 61.4
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 2.3e-48 196.8 200 57.0
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 3.0e-48 196.4 198 57.6
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 1.2e-47 194.5 201 52.7
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.5e-47 194.1 201 52.7
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.3e-46 191.0 195 56.4
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.7e-46 190.7 201 57.2
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 1.7e-46 190.7 205 58.5
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 4.9e-46 189.1 166 65.7
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.4e-45 187.6 203 54.2
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.8e-45 187.2 201 56.2
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 9.2e-45 184.9 201 56.2
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.2e-44 184.5 203 52.7
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.2e-44 184.5 205 55.1
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 7.8e-44 181.8 200 54.0
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 2.9e-43 179.9 189 55.6
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 1.1e-42 177.9 195 54.4
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 9.5e-42 174.9 190 54.7
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 8.0e-41 171.8 167 61.7
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 8.0e-41 171.8 198 52.5
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 4.0e-40 169.5 198 51.5
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 5.2e-40 169.1 193 53.9
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 6.8e-40 168.7 215 48.8
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.2e-39 167.9 211 51.7
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.4e-39 166.4 171 58.5
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.4e-39 166.4 215 47.0
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 5.8e-39 165.6 218 46.8
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 9.8e-39 164.9 211 50.7
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 9.8e-39 164.9 211 50.7
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.3e-38 164.5 171 57.3
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 2.2e-38 163.7 186 53.8
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 2.9e-38 163.3 198 49.0
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.7e-38 162.9 192 50.5
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.9e-38 162.5 191 50.8
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 6.4e-38 162.2 162 56.8
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 8.3e-38 161.8 211 48.3
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.1e-37 161.4 162 55.6
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.1e-37 161.4 162 55.6
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 4.1e-37 159.5 171 56.7
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 3.5e-36 156.4 190 50.5
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 7.8e-36 155.2 102 76.5
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 2.3e-35 153.7 229 44.1
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.0e-35 153.3 214 47.7
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 9.5e-34 148.3 186 47.8
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 8.0e-33 145.2 148 56.1
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 4.9e-30 136.0 84 75.0
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 4.1e-29 132.9 196 41.3
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 4.1e-29 132.9 203 44.8
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.6e-28 131.0 195 42.1
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.5e-26 123.6 187 43.3
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.2e-25 121.3 128 57.8
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 4.4e-23 112.8 151 45.0
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.7e-22 109.8 71 78.9
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.9e-22 109.4 183 41.0
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 8.3e-22 108.6 195 36.9
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.1e-21 106.3 192 38.5
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 3.5e-20 103.2 70 74.3
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 6.2e-17 92.4 115 50.4
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 4.0e-16 89.7 201 33.3
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 7.6e-15 85.5 91 52.7
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 9.9e-15 85.1 79 59.5
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.9e-13 80.9 63 57.1
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 3.3e-10 70.1 50 64.0
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 1.3e-09 68.2 50 62.0
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 6.9e-08 62.4 82 46.3


User provided reference genes

Program Settings