Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.9e-119 432.6 225 100.0
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 8.1e-78 294.3 207 81.2
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 4.8e-54 215.3 247 57.1
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.7e-46 189.1 314 46.8
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 9.0e-45 184.5 306 47.4
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 4.9e-43 178.7 223 54.3
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 1.9e-42 176.8 223 53.8
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.9e-39 166.8 321 43.6
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 2.5e-39 166.4 326 42.9
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 9.6e-39 164.5 320 43.1
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 5.3e-37 158.7 321 42.1
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 2.0e-36 156.8 232 50.9
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 7.9e-33 144.8 325 39.4
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 5.1e-32 142.1 338 37.0
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 4.3e-31 139.0 319 39.5
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 3.1e-29 132.9 348 35.9
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 5.3e-29 132.1 335 37.0
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 6.9e-29 131.7 312 39.1
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.0e-28 130.2 227 44.5
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.6e-28 129.8 309 39.2
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 4.5e-28 129.0 264 40.2
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 4.5e-28 129.0 339 36.6
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 1.0e-27 127.9 246 43.1
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.3e-27 127.5 235 46.0
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.3e-27 127.5 235 46.0
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.3e-27 127.5 338 35.5
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.3e-27 127.5 210 47.6
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.7e-27 127.1 221 47.1
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 2.2e-27 126.7 336 36.3
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 2.9e-27 126.3 215 44.7
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 2.9e-27 126.3 338 36.4
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 2.9e-27 126.3 217 46.5
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 5.0e-27 125.6 204 48.5
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 5.0e-27 125.6 218 46.3
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 6.5e-27 125.2 336 36.6
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 4.2e-26 122.5 210 46.2
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 4.2e-26 122.5 247 42.9
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 4.2e-26 122.5 310 36.1
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 5.5e-26 122.1 222 45.0
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 7.2e-26 121.7 336 35.7
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.2e-25 120.9 337 36.2
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.2e-25 120.9 341 37.8
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.6e-25 120.6 297 36.7
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 2.1e-25 120.2 218 46.3
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 2.1e-25 120.2 282 38.7
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 2.1e-25 120.2 325 37.2
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.6e-25 119.4 306 38.9
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 4.6e-25 119.0 331 36.3
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.4e-24 117.5 314 36.0
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 1.4e-24 117.5 247 40.1
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 1.8e-24 117.1 296 36.8
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.8e-24 117.1 308 38.6
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 2.3e-24 116.7 318 36.8
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 2.3e-24 116.7 263 40.7
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.3e-24 116.7 301 36.5
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.9e-24 115.9 322 36.0
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 5.1e-24 115.5 234 42.7
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 6.7e-24 115.2 238 42.0
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 6.7e-24 115.2 326 36.8
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 8.8e-24 114.8 307 37.8
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.1e-23 114.4 242 41.3
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.1e-23 114.4 304 35.9
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.5e-23 114.0 356 34.8
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 2.5e-23 113.2 214 44.9
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 2.5e-23 113.2 233 44.6
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 3.3e-23 112.8 270 34.8
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 4.3e-23 112.5 229 41.5
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 4.3e-23 112.5 314 37.9
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 5.7e-23 112.1 212 45.8
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 5.7e-23 112.1 222 42.8
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 7.4e-23 111.7 293 37.5
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 9.7e-23 111.3 327 35.2
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.3e-22 110.9 206 45.1
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.3e-22 110.9 206 45.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.7e-22 110.5 291 37.1
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.7e-22 110.5 282 37.9
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 2.2e-22 110.2 279 38.0
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 2.2e-22 110.2 214 44.4
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 2.8e-22 109.8 215 42.8
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 2.8e-22 109.8 322 37.6
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 3.7e-22 109.4 308 36.4
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 3.7e-22 109.4 204 46.6
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 3.7e-22 109.4 215 44.7
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 4.8e-22 109.0 295 39.7
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 4.8e-22 109.0 212 44.3
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.8e-22 109.0 206 45.1
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 6.3e-22 108.6 208 43.3
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 8.2e-22 108.2 306 35.0
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 1.1e-21 107.8 289 38.1
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 1.4e-21 107.5 223 43.9
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 1.8e-21 107.1 209 44.5
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.8e-21 107.1 324 36.1
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.8e-21 107.1 290 35.9
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.8e-21 107.1 290 35.5
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.8e-21 107.1 287 37.6
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 2.4e-21 106.7 206 48.5
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 3.1e-21 106.3 207 48.8
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.1e-21 106.3 307 34.5
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 3.1e-21 106.3 201 45.3
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.1e-21 106.3 306 36.6
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.1e-21 105.9 307 36.2
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 5.3e-21 105.5 206 48.1
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 5.3e-21 105.5 288 36.8
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 6.9e-21 105.1 263 37.3
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 9.1e-21 104.8 212 43.4
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 1.2e-20 104.4 224 41.5
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 4.5e-20 102.4 212 42.9
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 4.5e-20 102.4 166 44.6
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 1.0e-19 101.3 210 42.4
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.3e-19 100.9 192 44.8
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.3e-19 100.9 317 32.5
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.7e-19 100.5 253 38.7
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 2.9e-19 99.8 313 33.9
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.0e-19 99.0 254 36.2
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 6.5e-19 98.6 296 35.5
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 6.5e-19 98.6 200 44.0
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 6.5e-19 98.6 283 36.0
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 7.2e-18 95.1 237 39.2
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 9.4e-18 94.7 207 42.0
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.2e-17 94.4 272 34.2
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.6e-17 94.0 270 37.4
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 1.6e-17 94.0 181 44.8
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.6e-17 94.0 312 31.4
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 2.1e-17 93.6 196 41.8
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 2.1e-17 93.6 209 37.8
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.1e-17 93.6 285 31.9
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 2.7e-17 93.2 194 43.8
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 3.6e-17 92.8 171 43.9
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.1e-17 92.0 316 30.7
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 6.1e-17 92.0 226 39.4
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 6.1e-17 92.0 232 40.1
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 1.0e-16 91.3 206 41.7
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 1.4e-16 90.9 254 37.0
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.4e-16 90.9 200 41.5
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.8e-16 90.5 228 37.3
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.3e-16 90.1 313 31.6
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 3.0e-16 89.7 331 30.5
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 8.8e-16 88.2 210 37.1
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 1.1e-15 87.8 239 37.2
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 1.1e-15 87.8 236 39.8
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.1e-15 87.8 194 42.3
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 1.5e-15 87.4 275 33.8
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 7.4e-15 85.1 330 30.0
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 9.7e-15 84.7 257 36.2
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 1.7e-14 84.0 162 43.8
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.1e-13 81.3 195 38.5
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 4.1e-13 79.3 239 35.6
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 4.1e-13 79.3 239 35.6
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 5.3e-13 79.0 295 30.5
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 7.0e-13 78.6 200 39.0
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 9.1e-13 78.2 277 33.9
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.2e-12 77.8 142 47.2
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 3.5e-12 76.3 206 35.9
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 6.5e-11 72.0 180 40.6
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.1e-10 71.2 124 44.4
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 3.6e-09 66.2 128 46.1
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.6e-09 66.2 191 40.3
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 8.0e-09 65.1 188 35.6
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 1.0e-08 64.7 109 44.0
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 6.7e-08 62.0 257 32.3
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 8.8e-08 61.6 150 36.0
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.8e-08 61.6 180 37.2
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.8e-08 61.6 180 37.2
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 1.5e-07 60.8 98 50.0
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.0e-07 60.5 170 36.5
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 7.5e-07 58.5 222 32.9


User provided reference genes

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