Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 4562.7 2385 100.0
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 2176.7 1274 91.8
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1860.5 1257 80.4
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1794.6 1256 78.3
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1793.5 1256 78.3
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1726.8 1242 76.9
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1701.8 1248 75.4
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1608.2 1264 71.0
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1579.7 1258 70.6
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1562.4 1244 67.3
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1559.3 1234 68.0
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1545.8 1226 67.2
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1533.9 1265 65.9
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1526.1 1227 66.6
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1518.4 1257 65.4
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1486.1 1213 64.8
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1485.7 1247 64.6
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1469.1 1305 63.5
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1462.6 1330 60.4
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1462.6 1287 62.9
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1456.0 1205 65.6
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1451.0 1218 64.1
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1448.7 1257 64.2
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1441.0 1251 62.4
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1439.5 1264 62.7
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1434.9 1223 63.0
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1434.1 1346 60.9
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1432.9 1245 62.6
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1429.5 1218 64.0
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1426.8 1267 61.1
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1426.4 1265 62.7
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1425.6 1224 62.3
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1424.1 1274 62.6
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1422.9 1224 62.4
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1422.9 1245 62.4
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1422.1 1217 64.3
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1418.3 1224 63.5
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1416.0 1318 60.3
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1416.0 1182 63.3
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1414.8 1262 61.1
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1413.3 1241 63.3
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1411.7 1237 61.0
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1406.0 1250 62.4
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1403.3 1243 60.9
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1399.8 1244 61.2
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1398.6 1277 59.7
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1397.1 1259 60.8
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1396.3 1251 61.0
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1395.2 1282 60.7
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1395.2 1285 60.9
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1394.4 1253 60.7
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1392.9 1231 61.3
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1391.3 1252 61.6
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1387.1 1204 63.3
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1385.2 1281 60.6
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1383.6 1271 59.0
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1383.6 1285 60.4
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1376.3 1236 60.4
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1375.9 1223 60.8
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1375.1 1226 61.6
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1369.8 1278 59.5
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1364.7 1221 62.2
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1362.8 1254 60.0
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1361.7 1205 60.8
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1359.7 1241 60.6
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1354.7 1317 58.1
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1351.3 1187 62.4
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1343.2 1279 59.2
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1340.1 1275 59.3
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1339.7 1226 60.8
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1339.3 1226 60.8
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1337.8 1259 59.8
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1336.6 1261 58.0
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1335.5 1284 58.1
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1333.2 1212 60.7
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1325.5 1249 58.1
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1324.7 1271 58.9
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1321.2 1296 58.9
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1317.8 1207 60.9
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1312.7 1196 58.8
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1301.6 1234 57.6
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1287.7 1247 56.3
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1277.3 1248 57.1
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1276.5 1187 58.5
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1275.4 1267 55.7
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1273.1 1179 58.9
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1252.3 1200 57.7
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1252.3 1200 57.7
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1251.9 1206 56.7
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1249.2 1213 56.8
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1245.7 1204 57.1
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1236.9 1289 54.2
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1232.6 1290 53.2
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1204.1 1253 54.7
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1194.9 1066 60.3
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1169.8 1174 56.0
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1169.1 1297 52.7
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1150.6 1252 53.9
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1146.3 1218 53.8
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1085.9 1129 55.4
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 1.0e-308 1064.7 935 63.3
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 5.2e-308 1062.4 1261 48.5
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 5.0e-303 1045.8 1261 47.9
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 1.1e-302 1044.6 1327 47.2
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 5.9e-296 1022.3 762 71.3
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 7.8e-288 995.3 1249 47.2
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 1.0e-271 941.8 1215 46.3
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 3.3e-270 936.8 1247 44.9
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 2.4e-244 850.9 667 66.9
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 3.7e-221 773.9 1253 41.1
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 9.7e-214 749.2 1118 41.6
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 3.7e-173 614.4 816 49.1
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 1.1e-172 612.8 430 70.7
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 7.6e-158 563.5 526 62.0
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 2.9e-149 535.0 712 49.0
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 7.1e-148 530.4 1212 33.5
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 7.6e-142 510.4 467 61.7
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 9.9e-142 510.0 1243 31.5
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 5.4e-140 504.2 450 62.4
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 7.9e-139 500.4 1236 32.0
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.8e-135 489.2 1297 29.8
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 4.5e-134 484.6 1232 31.5
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.1e-132 479.9 611 45.8
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 4.8e-128 464.5 1157 31.8
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 2.5e-100 372.5 1065 30.7
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 6.5e-93 347.8 1059 29.7
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 6.5e-93 347.8 1320 26.0
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 2.0e-70 273.1 251 57.8
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 8.0e-67 261.2 507 36.1
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 2.3e-66 259.6 507 36.1
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 3.5e-62 245.7 323 44.3
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.1e-60 240.7 218 64.2
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 5.1e-45 188.7 350 38.9
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.6e-38 167.2 127 71.7
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 2.3e-37 163.3 1237 22.2
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.3e-29 137.5 516 24.8
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.3e-29 136.7 121 62.0
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 2.4e-26 126.7 191 45.0
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 4.0e-26 125.9 100 63.0
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 9.3e-23 114.8 139 55.4
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 9.0e-18 98.2 84 60.7
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 2.6e-17 96.7 91 59.3
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 4.9e-16 92.4 106 43.4
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 8.4e-16 91.7 71 56.3
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 8.4e-16 91.7 188 35.1
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 2.5e-15 90.1 61 70.5
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 1.2e-14 87.8 112 49.1
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 1.8e-13 84.0 95 47.4
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.9e-12 80.5 60 66.7
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.9e-12 80.5 60 66.7
CAN.G504.46 Capsicum annuum HOM05D004672 ORTHO05D115348 6.5e-08 65.5 93 45.2
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 1.1e-07 64.7 95 43.2
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 4.2e-07 62.8 49 61.2
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 2.7e-06 60.1 50 62.0


User provided reference genes

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