Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.2e-104 383.3 206 100.0
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.1e-81 307.0 206 84.0
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 9.1e-68 260.8 206 73.3
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 9.1e-68 260.8 206 73.3
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 1.9e-65 253.1 206 73.8
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 5.5e-65 251.5 206 72.3
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 7.2e-65 251.1 206 69.4
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.6e-56 223.4 208 65.4
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 6.3e-53 211.5 191 66.0
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 7.0e-52 208.0 192 63.5
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 1.0e-50 204.1 188 63.3
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 8.5e-50 201.1 198 62.1
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 1.1e-49 200.7 200 61.0
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 1.5e-49 200.3 199 60.8
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 2.5e-49 199.5 202 62.9
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 5.5e-49 198.4 189 61.9
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 2.1e-48 196.4 198 60.6
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 3.6e-48 195.7 208 58.7
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 3.6e-48 195.7 193 63.2
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 8.0e-48 194.5 193 62.7
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 8.0e-48 194.5 193 62.7
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 2.3e-47 193.0 193 62.2
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 4.0e-47 192.2 194 58.8
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 8.8e-47 191.0 192 62.0
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 1.2e-46 190.7 194 58.2
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 1.2e-46 190.7 196 61.2
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 3.3e-46 189.1 195 61.0
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 3.3e-46 189.1 195 61.0
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 4.4e-46 188.7 197 57.9
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 5.7e-46 188.3 194 57.2
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 5.7e-46 188.3 183 62.3
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 7.5e-46 188.0 195 60.5
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 7.5e-46 188.0 192 60.4
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 2.2e-45 186.4 192 62.0
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 2.2e-45 186.4 196 60.2
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 2.8e-45 186.0 188 59.6
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 2.8e-45 186.0 181 61.3
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 4.8e-45 185.3 160 65.6
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 6.3e-45 184.9 202 57.4
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 8.2e-45 184.5 178 60.1
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 1.4e-44 183.7 165 63.0
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 1.8e-44 183.3 191 60.2
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 1.8e-44 183.3 186 57.5
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 2.4e-44 183.0 182 62.6
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 3.1e-44 182.6 197 58.4
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 4.1e-44 182.2 190 59.5
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 4.1e-44 182.2 191 59.7
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 5.3e-44 181.8 191 59.7
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 1.2e-43 180.6 186 57.0
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 2.7e-43 179.5 198 60.6
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 4.5e-43 178.7 190 56.8
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 5.9e-43 178.3 192 56.8
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 1.7e-42 176.8 204 57.8
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 2.9e-42 176.0 197 58.9
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 3.8e-42 175.6 213 55.9
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 6.5e-42 174.9 191 56.5
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 1.5e-41 173.7 218 55.0
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 1.9e-41 173.3 204 56.9
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 2.5e-41 172.9 196 56.6
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 2.5e-41 172.9 203 58.1
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 4.2e-41 172.2 194 54.6
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 5.5e-41 171.8 195 55.9
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 5.5e-41 171.8 203 56.7
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 5.5e-41 171.8 208 56.2
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 7.2e-41 171.4 194 55.2
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 9.4e-41 171.0 196 56.6
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 1.2e-40 170.6 204 54.9
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 1.2e-40 170.6 206 55.3
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 1.2e-40 170.6 204 54.9
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.6e-40 170.2 189 56.6
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 2.1e-40 169.9 166 61.4
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 2.7e-40 169.5 196 56.6
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 3.6e-40 169.1 197 55.8
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 3.6e-40 169.1 197 56.3
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 6.1e-40 168.3 211 55.0
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 6.1e-40 168.3 211 55.0
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 6.1e-40 168.3 191 55.5
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 8.0e-40 167.9 194 56.2
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 1.0e-39 167.5 193 55.4
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 1.8e-39 166.8 200 55.0
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 2.3e-39 166.4 215 54.4
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 2.3e-39 166.4 211 54.5
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 2.3e-39 166.4 158 63.9
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 3.0e-39 166.0 212 52.4
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 3.0e-39 166.0 211 54.0
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 6.8e-39 164.9 216 53.2
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 6.8e-39 164.9 186 57.5
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 8.8e-39 164.5 205 55.6
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 1.2e-38 164.1 207 51.2
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.5e-38 163.7 188 55.3
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.5e-38 163.7 188 55.3
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 7.5e-38 161.4 194 52.6
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 9.8e-38 161.0 139 67.6
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 9.8e-38 161.0 139 67.6
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 1.3e-37 160.6 139 67.6
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 1.7e-37 160.2 185 54.1
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 2.2e-37 159.8 211 53.6
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 2.2e-37 159.8 190 53.2
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 1.1e-36 157.5 139 65.5
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 5.4e-36 155.2 195 53.8
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 9.1e-36 154.5 194 52.1
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 1.6e-35 153.7 194 50.5
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 1.1e-33 147.5 134 65.7
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 1.1e-33 147.5 133 63.9
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.5e-33 147.1 261 42.9
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 3.3e-33 146.0 192 51.0
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 7.2e-33 144.8 200 52.5
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 1.6e-32 143.7 176 53.4
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 2.8e-29 132.9 142 55.6
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 3.3e-25 119.4 147 51.0
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 7.3e-25 118.2 164 48.2
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 7.3e-25 118.2 74 78.4
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 1.4e-23 114.0 340 34.7
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 2.6e-22 109.8 200 42.5
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 3.7e-21 105.9 184 44.6
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 5.4e-20 102.1 161 49.1
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 1.2e-19 100.9 188 41.5
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 1.6e-19 100.5 210 38.6
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 3.5e-19 99.4 144 45.1
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 1.1e-17 94.4 99 61.6
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 5.6e-17 92.0 177 39.5
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 5.2e-15 85.5 198 37.4
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 1.3e-13 80.9 82 52.4
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 7.0e-12 75.1 97 53.6
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 4.6e-11 72.4 97 52.6
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 1.0e-10 71.2 123 43.1
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 5.6e-09 65.5 46 76.1
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 1.1e-07 61.2 74 55.4
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 5.8e-06 55.5 33 84.8


User provided reference genes

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