Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002329g0140 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.3e-124 450.7 430 100.0
Nitab4.5_0008536g0030 Nicotiana tabacum HOM05D003361 ORTHO05D003760 5.7e-80 302.4 285 81.4
PGSC0003DMG400007912 Solanum tuberosum HOM05D003361 ORTHO05D003760 2.5e-75 287.0 302 66.2
Solyc12g009870.2 Solanum lycopersicum HOM05D003361 ORTHO05D003760 9.1e-70 268.5 301 63.1
Peaxi162Scf01694g00019 Petunia axillaris HOM05D003361 ORTHO05D003760 1.3e-68 264.6 227 78.0
Peaxi162Scf00088g00618 Petunia axillaris HOM05D003361 ORTHO05D003760 5.9e-53 212.6 354 56.5
Nitab4.5_0002286g0090 Nicotiana tabacum HOM05D003361 ORTHO05D003760 6.5e-52 209.1 177 59.9
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 8.5e-52 208.8 177 60.5
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 1.9e-51 207.6 177 59.9
PGSC0003DMG400030688 Solanum tuberosum HOM05D003361 ORTHO05D003760 2.5e-51 207.2 296 61.1
Solyc07g007420.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 2.1e-50 204.1 177 59.9
Dinv36449 Davidia involucrata HOM05D003361 ORTHO05D003760 8.5e-44 182.2 172 54.1
Dinv41445 Davidia involucrata HOM05D003361 ORTHO05D003760 1.9e-43 181.0 170 55.3
Haze_16605 Corylus avellana HOM05D003361 ORTHO05D003760 1.2e-42 178.3 228 43.0
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 1.2e-42 178.3 365 45.2
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.8e-41 174.5 341 41.6
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 3.0e-41 173.7 177 50.3
Hma1.2p1_0461F.1_g157700 Hydrangea macrophylla HOM05D003361 ORTHO05D003760 8.8e-41 172.2 177 51.4
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 3.4e-40 170.2 328 53.7
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 7.5e-40 169.1 170 53.5
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 9.8e-40 168.7 291 37.1
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 2.8e-39 167.2 169 52.1
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 2.8e-39 167.2 325 52.0
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 2.8e-39 167.2 325 51.1
Nitab4.5_0009284g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 8.3e-39 165.6 170 72.9
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 8.3e-39 165.6 170 50.6
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 8.3e-39 165.6 325 52.6
TAR383G0111 Trochodendron aralioides HOM05D003361 ORTHO05D003760 1.1e-38 165.2 172 50.6
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 1.4e-38 164.9 177 49.7
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 1.4e-38 164.9 169 50.9
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 1.4e-38 164.9 226 56.2
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 1.8e-38 164.5 170 51.8
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 1.8e-38 164.5 169 50.9
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 2.4e-38 164.1 171 51.5
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 2.4e-38 164.1 323 52.3
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 2.4e-38 164.1 225 57.8
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 4.1e-38 163.3 168 49.4
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 7.0e-38 162.5 170 49.4
Dinv30637 Davidia involucrata HOM05D003361 ORTHO05D003760 9.1e-38 162.2 170 50.0
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 9.1e-38 162.2 169 50.3
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 9.1e-38 162.2 226 56.6
Phvul.003G172400 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 9.1e-38 162.2 164 53.0
Psat7g257800 Pisum sativum HOM05D003361 ORTHO05D003760 9.1e-38 162.2 170 50.6
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 1.6e-37 161.4 227 56.8
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 2.0e-37 161.0 170 50.0
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 2.0e-37 161.0 172 50.6
Actinidia15974 Actinidia chinensis HOM05D003361 ORTHO05D003760 2.7e-37 160.6 227 55.9
SalBow7G3482 Salvia bowleyana HOM05D003361 ORTHO05D003760 3.5e-37 160.2 170 50.0
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 3.5e-37 160.2 171 49.1
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 4.5e-37 159.8 170 48.2
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 4.5e-37 159.8 170 48.2
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 5.9e-37 159.5 171 51.5
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 5.9e-37 159.5 328 50.3
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 7.7e-37 159.1 171 50.3
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 7.7e-37 159.1 170 50.6
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 1.0e-36 158.7 170 49.4
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 1.0e-36 158.7 168 48.8
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 1.0e-36 158.7 170 47.6
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 1.7e-36 157.9 170 50.6
Sopen03g036300 Solanum pennellii HOM05D003361 ORTHO05D003760 1.7e-36 157.9 168 50.6
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 2.3e-36 157.5 176 49.4
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 2.3e-36 157.5 169 50.3
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.3e-36 157.5 169 50.3
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.3e-36 157.5 169 50.3
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.3e-36 157.5 169 50.3
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 2.3e-36 157.5 227 55.9
VMungo0331G0010 Vigna mungo HOM05D003361 ORTHO05D003760 2.3e-36 157.5 220 57.3
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 2.9e-36 157.1 170 48.2
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 2.9e-36 157.1 169 49.1
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.9e-36 157.1 169 50.3
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 3.8e-36 156.8 171 49.1
TPR.G7990 Trifolium pratense HOM05D003361 ORTHO05D003760 3.8e-36 156.8 176 47.2
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 5.0e-36 156.4 168 50.6
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 6.6e-36 156.0 226 58.0
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 6.6e-36 156.0 175 45.7
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 8.6e-36 155.6 169 47.9
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 8.6e-36 155.6 225 55.6
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 1.1e-35 155.2 169 49.7
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 1.1e-35 155.2 170 50.0
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 1.1e-35 155.2 170 48.8
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 1.1e-35 155.2 171 49.7
HPP92_017331 Vanilla planifolia HOM05D003361 ORTHO05D003760 1.1e-35 155.2 175 49.7
Cc06_g07660 Coffea canephora HOM05D003361 ORTHO05D003760 1.5e-35 154.8 227 41.4
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.5e-35 154.8 170 48.8
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 1.9e-35 154.5 176 47.7
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 1.9e-35 154.5 226 54.9
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 1.9e-35 154.5 170 48.2
MD02G1018400 Malus domestica HOM05D003361 ORTHO05D003760 1.9e-35 154.5 171 49.7
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 1.9e-35 154.5 171 49.7
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 2.5e-35 154.1 169 49.1
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 2.5e-35 154.1 170 47.6
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 3.3e-35 153.7 168 50.6
Lalb_Chr12g0198401 Lupinus albus HOM05D003361 ORTHO05D003760 4.2e-35 153.3 177 46.9
Medtr4g009873 Medicago truncatula HOM05D003361 ORTHO05D003760 4.2e-35 153.3 168 48.8
Sc08g0006030 Simmondsia chinensis HOM05D003361 ORTHO05D003760 4.2e-35 153.3 172 50.0
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 9.5e-35 152.1 169 47.9
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 1.2e-34 151.8 177 47.5
Glyma.17G107400 Glycine max HOM05D003361 ORTHO05D003760 1.6e-34 151.4 173 48.0
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 1.6e-34 151.4 171 49.1
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 2.1e-34 151.0 170 50.0
Psat0s571g0080 Pisum sativum HOM05D003361 ORTHO05D003760 2.1e-34 151.0 171 48.5
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 2.8e-34 150.6 169 49.1
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 2.8e-34 150.6 167 48.5
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 2.8e-34 150.6 171 46.8
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 4.7e-34 149.8 168 47.6
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 4.7e-34 149.8 322 51.6
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 8.0e-34 149.1 170 48.8
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 8.0e-34 149.1 170 48.2
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 1.0e-33 148.7 169 48.5
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 1.0e-33 148.7 170 45.9
arahy.Tifrunner.gnm1.ann1.MWAB5B Arachis hypogaea HOM05D003361 ORTHO05D003760 1.8e-33 147.9 226 56.2
Psat1g109200 Pisum sativum HOM05D003361 ORTHO05D003760 1.8e-33 147.9 177 45.8
RcHm_v2.0_Chr2g0087081 Rosa chinensis HOM05D003361 ORTHO05D003760 1.8e-33 147.9 174 47.7
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 2.3e-33 147.5 226 55.8
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 3.0e-33 147.1 170 46.5
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 3.0e-33 147.1 169 46.2
arahy.Tifrunner.gnm1.ann1.T3C7Q8 Arachis hypogaea HOM05D003361 ORTHO05D003760 4.0e-33 146.7 226 49.1
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 4.0e-33 146.7 171 46.2
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 4.0e-33 146.7 171 46.2
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 4.0e-33 146.7 168 47.6
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 5.2e-33 146.4 169 47.9
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 5.2e-33 146.4 164 49.4
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 6.8e-33 146.0 168 48.2
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 6.8e-33 146.0 169 45.6
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 8.9e-33 145.6 170 45.3
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 8.9e-33 145.6 227 37.4
FAN28G0525 Fragaria x ananassa HOM05D003361 ORTHO05D003760 8.9e-33 145.6 174 46.0
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 1.2e-32 145.2 170 47.1
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 1.2e-32 145.2 169 47.9
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 1.5e-32 144.8 170 46.5
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 1.5e-32 144.8 170 47.6
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 2.0e-32 144.4 170 46.5
FvH4_1g02020 Fragaria vesca HOM05D003361 ORTHO05D003760 2.6e-32 144.1 174 45.4
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 3.4e-32 143.7 173 46.2
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 4.4e-32 143.3 172 47.1
Prupe.7G252400 Prunus persica HOM05D003361 ORTHO05D003760 4.4e-32 143.3 108 62.0
arahy.Tifrunner.gnm1.ann1.H7Z4S8 Arachis hypogaea HOM05D003361 ORTHO05D003760 7.5e-32 142.5 173 46.2
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 9.8e-32 142.1 170 47.1
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 9.8e-32 142.1 170 47.1
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 1.7e-31 141.4 170 44.7
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 1.7e-31 141.4 171 46.8
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 2.2e-31 141.0 170 46.5
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 2.2e-31 141.0 170 46.5
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 3.7e-31 140.2 170 46.5
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 2.4e-30 137.5 115 55.7
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 2.4e-30 137.5 170 43.5
SEGI_28212 Sequoiadendron giganteum HOM05D003361 ORTHO05D003760 5.4e-30 136.3 227 51.5
CDE05G0968 Ceratophyllum demersum HOM05D003361 ORTHO05D003760 9.2e-30 135.6 166 47.0
Duzib187G1093 Durio zibethinus HOM05D003361 ORTHO05D003760 3.9e-28 130.2 102 58.8
MD17G1217000 Malus domestica HOM05D003361 ORTHO05D003760 3.9e-28 130.2 152 67.1
Ah.09g224100 Amaranthus hybridus HOM05D003361 ORTHO05D003760 5.0e-28 129.8 171 43.9
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 6.6e-28 129.4 111 55.9
PSO170G6803 Papaver somniferum HOM05D003361 ORTHO05D003760 2.5e-27 127.5 178 41.6
SHI02098 Sapria himalayana HOM05D003361 ORTHO05D003760 4.3e-27 126.7 177 41.2
Os02g0613200 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 5.6e-27 126.3 171 43.9
PSO017G3211 Papaver somniferum HOM05D003361 ORTHO05D003760 2.8e-26 124.0 180 41.1
Pp3c4_3150 Physcomitrium patens HOM05D003361 ORTHO05D003760 2.8e-26 124.0 172 40.7
Sed0010441 Sechium edule HOM05D003361 ORTHO05D003760 6.2e-26 122.9 296 41.2
Zm00001eb078100 Zea mays HOM05D003361 ORTHO05D003760 6.2e-26 122.9 169 42.6
Duzib150G0304 Durio zibethinus HOM05D003361 ORTHO05D003760 1.0e-25 122.1 102 55.9
Os04g0503500 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 1.0e-25 122.1 170 43.5
Zm00001eb247040 Zea mays HOM05D003361 ORTHO05D003760 1.8e-25 121.3 166 43.4
Lj3g0027196 Lotus japonicus HOM05D003361 ORTHO05D003760 5.2e-25 119.8 136 43.4
HanXRQChr09g0274781 Helianthus annuus HOM05D003361 ORTHO05D003760 8.3e-23 112.5 164 39.6
AagrBONN_evm.TU.Sc2ySwM_362.1382 Anthoceros agrestis HOM05D003361 ORTHO05D003760 6.0e-21 106.3 261 46.4
SMO200G0229 Selaginella moellendorffii HOM05D003361 ORTHO05D003760 1.0e-20 105.5 171 36.8
Glyma.13G367200 Glycine max HOM05D003361 ORTHO05D003760 3.9e-20 103.6 252 42.5
Pp3c8_1510 Physcomitrium patens HOM05D003361 ORTHO05D003760 5.0e-20 103.2 173 34.1
Mapoly0032s0095 Marchantia polymorpha HOM05D003361 ORTHO05D003760 1.9e-19 101.3 300 31.3
arahy.Tifrunner.gnm1.ann1.TB3UR8 Arachis hypogaea HOM05D003361 ORTHO05D003760 4.3e-19 100.1 203 34.5
arahy.Tifrunner.gnm1.ann1.YII6YD Arachis hypogaea HOM05D003361 ORTHO05D003760 4.3e-19 100.1 203 34.5
unitig_699.g19089 Utricularia gibba HOM05D003361 ORTHO05D003760 6.8e-17 92.8 174 37.4
CAN.G509.10 Capsicum annuum HOM05D003361 ORTHO05D003760 3.4e-16 90.5 57 71.9
Psat0s520g0120 Pisum sativum HOM05D003361 ORTHO05D003760 4.1e-14 83.6 65 56.9
Glyma.15G006200 Glycine max HOM05D003361 ORTHO05D003760 1.5e-11 75.1 106 41.5
CAN.G125.26 Capsicum annuum HOM05D003361 ORTHO05D003760 7.6e-08 62.8 38 81.6
Oeu027837.1 Olea europaea HOM05D003361 ORTHO05D003760 1.3e-07 62.0 103 68.9
SGA_v2.0_scaffold38G14981 Striga asiatica HOM05D003361 ORTHO05D003760 1.4e-06 58.5 106 41.5
Sopen04g024890 Solanum pennellii HOM05D021591 ORTHO05D018899 1.9e-06 58.2 46 65.2
Actinidia08955 Actinidia chinensis HOM05D003361 ORTHO05D003760 3.2e-06 57.4 46 63.0
SGA_v2.0_scaffold11G05885 Striga asiatica HOM05D003361 ORTHO05D003760 4.1e-06 57.0 75 49.3


User provided reference genes

Program Settings