Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 3.4e-67 258.1 120 100.0
Nitab4.5_0002558g0090 Nicotiana tabacum HOM05D008168 ORTHO05D010284 1.0e-18 97.1 49 89.8
Nitab4.5_0000105g0030 Nicotiana tabacum HOM05D015698 ORTHO05D015169 3.8e-18 95.1 49 89.8
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 4.4e-14 81.6 44 90.9
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 5.7e-14 81.3 41 95.1
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 2.8e-13 79.0 41 92.7
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 2.8e-13 79.0 41 92.7
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 2.8e-13 79.0 41 92.7
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 2.8e-13 79.0 41 92.7
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.7e-13 78.6 41 90.2
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.7e-13 78.6 41 90.2
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 3.7e-13 78.6 41 92.7
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.8e-13 78.2 41 90.2
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 8.3e-13 77.4 41 90.2
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 1.8e-12 76.3 39 94.9
Nitab4.5_0001919g0110 Nicotiana tabacum HOM05D015698 ORTHO05D015169 2.4e-12 75.9 42 81.0
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-11 73.6 41 85.4
ECA240G0764 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.3e-10 70.1 40 82.5
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.3e-10 70.1 41 80.5
Nitab4.5_0002418g0210 Nicotiana tabacum HOM05D015698 ORTHO05D015169 3.8e-10 68.6 36 83.3
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 5.5e-09 64.7 41 75.6
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 9.5e-09 63.9 46 71.7
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 2.8e-08 62.4 29 96.6
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 2.8e-08 62.4 29 96.6
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.8e-08 62.4 29 96.6
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 2.8e-08 62.4 29 96.6
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 2.8e-08 62.4 29 96.6
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.8e-08 62.4 29 96.6
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.8e-08 62.4 29 96.6
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.8e-08 62.4 29 96.6
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 3.6e-08 62.0 47 70.2
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 8.9e-07 57.4 33 84.8
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 4.4e-06 55.1 33 81.8


User provided reference genes

Program Settings