Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.4e-136 488.4 262 100.0
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.4e-134 483.0 262 98.5
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 9.6e-131 470.3 262 95.4
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.6e-130 468.4 262 94.3
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.0e-129 464.9 262 93.5
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.2e-128 463.4 262 93.9
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.0e-128 462.6 262 93.1
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 4.4e-128 461.5 262 93.5
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 7.6e-128 460.7 262 93.9
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.2e-127 459.1 262 93.1
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 4.9e-127 458.0 262 93.1
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.4e-121 439.1 262 87.8
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 85.9
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 86.6
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 86.3
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 85.1
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 85.9
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 85.9
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 85.9
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 87.0
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 86.3
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 84.7
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.7e-119 433.0 262 85.5
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 86.3
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 87.4
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 84.0
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 85.1
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 84.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.9e-118 429.5 262 85.1
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 84.4
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 84.0
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 84.0
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 84.7
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 84.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 83.2
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 83.6
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 83.6
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.2e-117 426.8 261 84.7
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 85.5
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 85.1
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 84.0
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 84.4
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 84.7
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 83.2
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 84.0
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 84.7
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 84.7
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 83.2
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 84.4
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 84.0
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 83.6
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 82.8
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 82.1
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 83.6
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 83.6
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 83.2
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 82.4
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 83.6
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 6.7e-116 421.0 259 84.9
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 6.7e-116 421.0 262 81.7
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 81.3
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.1e-115 420.2 263 84.0
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 82.8
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.9e-115 419.5 262 82.8
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 3.3e-115 418.7 263 83.7
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 84.4
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 80.5
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 81.3
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 81.7
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 2.8e-114 415.6 263 82.9
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 2.8e-114 415.6 264 84.8
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 80.9
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 82.1
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 82.8
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 82.4
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 82.8
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 82.1
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.1e-113 412.1 262 80.5
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 3.1e-113 412.1 262 82.4
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 80.9
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 80.9
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.0e-112 409.5 262 82.4
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 3.4e-112 408.7 264 83.7
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 4.5e-112 408.3 247 87.0
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 5.8e-112 407.9 262 80.9
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.3e-111 406.8 262 80.2
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 6.4e-111 404.4 247 86.2
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.4e-111 404.4 264 79.5
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.1e-110 403.7 262 79.8
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 1.4e-110 403.3 263 79.1
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 5.5e-110 401.4 263 80.2
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 9.3e-110 400.6 250 81.2
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 4.6e-109 398.3 262 79.0
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 80.2
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.8e-108 396.4 239 85.8
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 78.6
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 3.9e-108 395.2 263 79.1
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.4
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.9e-107 392.9 262 79.4
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 78.2
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 7.4e-107 391.0 262 78.2
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 1.3e-106 390.2 246 83.7
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 77.9
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 77.9
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 77.9
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 77.9
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 77.5
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 77.9
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 77.9
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 78.2
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 2.8e-106 389.0 263 79.5
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 77.9
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 4.8e-106 388.3 262 77.5
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 4.8e-106 388.3 262 77.5
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 77.9
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 8.2e-106 387.5 263 79.1
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.1e-105 387.1 262 77.5
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.4e-105 386.7 262 77.5
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.4e-105 386.7 262 77.5
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 4.0e-105 385.2 262 77.1
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.2e-104 383.6 263 77.2
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.2e-104 383.6 263 77.2
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.2e-104 383.6 263 77.2
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.2e-104 383.6 270 75.2
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.7e-103 379.8 270 74.8
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.1e-102 377.1 263 76.4
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 9.3e-102 374.0 263 77.2
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.6e-101 373.2 263 76.8
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 6.0e-101 371.3 263 76.8
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.8e-100 369.8 262 75.2
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 3.9e-100 368.6 264 75.4
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 3.3e-99 365.5 248 77.4
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 7.4e-99 364.4 262 75.6
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.3e-98 361.3 249 74.7
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 8.2e-98 360.9 218 87.2
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.9e-95 352.4 234 78.2
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 8.5e-95 350.9 210 87.1
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.4e-94 350.1 241 78.4
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.2e-94 349.0 263 69.6
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 7.9e-93 344.4 231 76.6
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.0e-92 344.0 223 78.5
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 8.8e-92 340.9 214 84.1
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.0e-91 339.7 263 68.8
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.5e-91 339.3 262 71.0
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 1.1e-89 334.0 219 79.0
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 6.7e-84 314.7 253 71.5
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 1.7e-82 310.1 267 62.2
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.1e-81 307.4 218 72.5
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.0e-79 298.5 231 64.9
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.4e-78 297.0 250 67.6
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.3e-75 285.8 247 64.4
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.1e-73 280.8 204 73.5
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.4e-73 280.4 208 69.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.5e-70 270.4 262 62.2
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.0e-68 264.2 263 58.6
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 1.0e-68 264.2 269 55.4
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 4.4e-67 258.8 211 64.9
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 6.1e-61 238.4 235 61.3
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.3e-55 219.9 244 49.6
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 7.2e-54 214.9 130 82.3
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 3.4e-51 206.1 120 87.5
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 2.4e-49 199.9 247 48.2
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.3e-47 194.1 138 74.6
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.1e-46 191.0 179 60.3
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 5.2e-44 182.2 118 79.7
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 5.8e-35 152.1 191 48.2
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 7.5e-35 151.8 96 80.2
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 9.8e-35 151.4 141 62.4
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 2.3e-23 113.6 69 84.1


User provided reference genes

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