Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 4.0e-201 704.5 351 100.0
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 2.3e-164 582.4 351 85.2
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 2.6e-160 568.9 321 89.1
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 6.5e-159 564.3 351 83.2
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 3.2e-158 562.0 353 83.3
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 1.3e-143 513.5 351 77.2
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 5.9e-136 488.0 318 79.2
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 7.1e-113 411.4 352 61.4
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 2.1e-112 409.8 324 64.2
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 1.5e-110 403.7 319 65.8
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 4.3e-110 402.1 336 62.8
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 1.6e-109 400.2 324 63.6
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 2.4e-108 396.4 324 63.9
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 3.1e-108 396.0 361 60.1
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 4.0e-108 395.6 324 63.6
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 2.6e-107 392.9 324 63.6
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 4.4e-107 392.1 360 58.6
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 1.9e-105 386.7 323 63.8
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 1.9e-105 386.7 322 63.0
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 2.4e-105 386.3 322 62.7
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 4.2e-105 385.6 393 55.7
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 7.8e-104 381.3 328 61.9
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 7.8e-104 381.3 325 60.9
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 1.0e-103 380.9 326 61.7
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 1.3e-103 380.6 326 61.3
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 8.7e-103 377.9 322 59.9
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 1.1e-102 377.5 323 61.3
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 1.9e-102 376.7 325 63.1
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 2.5e-102 376.3 322 60.2
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 3.3e-102 375.9 320 62.8
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 4.3e-102 375.6 331 60.1
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 7.3e-102 374.8 322 59.6
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 1.3e-101 374.0 322 59.6
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 2.1e-101 373.2 376 57.2
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 2.8e-101 372.9 322 63.0
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.4e-100 370.5 326 61.7
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 5.3e-100 368.6 326 61.3
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 5.3e-100 368.6 329 61.1
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 9.0e-100 367.9 326 59.5
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 1.5e-99 367.1 324 60.8
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 7.6e-99 364.8 321 58.9
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 1.7e-98 363.6 326 60.1
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 3.8e-98 362.5 351 57.0
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 8.4e-98 361.3 323 58.2
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 8.4e-98 361.3 321 58.3
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 1.4e-97 360.5 320 59.1
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 1.4e-97 360.5 320 59.7
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 1.6e-96 357.1 330 59.4
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 2.1e-96 356.7 285 63.5
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 2.7e-96 356.3 353 57.8
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 3.5e-96 355.9 331 56.5
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 7.8e-96 354.8 336 57.7
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 2.3e-95 353.2 326 58.9
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 3.9e-95 352.4 336 57.4
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 6.6e-95 351.7 322 57.5
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.5e-94 350.5 351 55.3
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 1.5e-94 350.5 322 57.5
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 2.5e-94 349.7 338 56.2
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 7.3e-94 348.2 323 57.9
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 1.6e-93 347.1 281 63.7
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 2.1e-93 346.7 353 53.3
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 6.2e-93 345.1 331 57.4
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 8.1e-93 344.7 323 57.6
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 8.1e-93 344.7 323 57.6
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 1.1e-92 344.4 326 56.1
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 5.3e-92 342.0 328 56.4
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 5.3e-92 342.0 325 55.4
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 7.6e-91 338.2 337 55.2
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 1.7e-90 337.0 322 54.3
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 2.1e-88 330.1 326 56.1
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 2.7e-88 329.7 330 56.4
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 8.7e-87 324.7 321 54.5
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 1.3e-85 320.9 332 53.6
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 5.3e-84 315.5 322 50.9
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 1.4e-81 307.4 323 53.9
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 1.9e-81 307.0 343 49.9
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 4.2e-81 305.8 335 50.7
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 5.5e-81 305.4 348 48.3
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 7.1e-81 305.1 326 50.9
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 9.3e-81 304.7 305 54.1
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 1.0e-79 301.2 327 50.8
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 5.1e-79 298.9 310 53.5
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 1.9e-78 297.0 347 49.3
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 2.5e-78 296.6 332 48.5
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 5.7e-78 295.4 325 50.2
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 7.4e-78 295.0 333 49.2
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 9.6e-78 294.7 251 61.0
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 2.1e-77 293.5 325 50.2
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 2.1e-77 293.5 360 49.2
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 2.0e-75 287.0 353 47.0
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 2.0e-75 287.0 353 47.0
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 2.0e-75 287.0 330 49.1
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 1.4e-73 280.8 334 47.6
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 9.3e-73 278.1 248 56.0
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 3.7e-69 266.2 341 42.5
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 6.3e-69 265.4 256 53.9
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.4e-65 254.2 287 51.6
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 1.6e-64 250.8 214 58.9
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 2.1e-64 250.4 329 45.6
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 4.6e-64 249.2 266 54.9
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 1.4e-60 237.7 385 40.3
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.0e-58 231.5 184 63.0
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 8.5e-58 228.4 219 56.2
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 1.1e-57 228.0 356 38.8
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.8e-52 210.7 378 35.4
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 7.7e-43 178.7 146 65.8
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.2e-40 171.4 329 36.5
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 5.7e-38 162.5 232 45.3
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 3.2e-33 146.7 205 45.4
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 3.4e-30 136.7 183 44.3
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 8.3e-21 105.5 76 69.7
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 1.0e-15 88.6 150 36.7
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 3.1e-15 87.0 92 51.1
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 2.6e-14 84.0 81 54.3
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 5.6e-09 66.2 167 27.5
FAN14G1268 Fragaria x ananassa HOM05D006908 ORTHO05D008662 7.3e-09 65.9 72 51.4
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 7.3e-09 65.9 160 30.6
BraA07t30623Z Brassica rapa HOM05D000058 ORTHO05D000255 1.1e-07 62.0 274 24.5
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 1.8e-07 61.2 149 30.9
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 5.2e-07 59.7 197 29.9
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 5.2e-07 59.7 200 28.5
SMO351G0211 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 5.2e-07 59.7 145 31.0
Cpa.g.sc41.10 Carica papaya HOM05D006908 ORTHO05D008662 1.2e-06 58.5 92 44.6
Sed0014482 Sechium edule HOM05D002956 ORTHO05D008031 2.0e-06 57.8 115 29.6
Lj2P248T46 Lonicera japonica HOM05D001602 ORTHO05D001470 2.6e-06 57.4 97 39.2
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 3.4e-06 57.0 277 25.6
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 3.4e-06 57.0 167 25.7
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 4.4e-06 56.6 243 26.3
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 4.4e-06 56.6 162 29.0
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 5.8e-06 56.2 145 27.6
Cpa.g.sc1626.1 Carica papaya HOM05D006908 ORTHO05D008662 7.5e-06 55.8 58 51.7
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 7.5e-06 55.8 198 26.8
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 7.5e-06 55.8 166 27.7
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 7.5e-06 55.8 240 27.1
TWI56G0412 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 7.5e-06 55.8 171 29.2
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 9.8e-06 55.5 110 28.2
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 9.8e-06 55.5 126 27.8
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 9.8e-06 55.5 91 30.8


User provided reference genes

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